BAC Information

Click to search

BAC

Clone NameMSMg01-143I02
Chromosome19 (Build37)
Map Location 51,744,194 - 51,744,436
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs1, LOC100042924
Downstream geneLOC100042928, LOC668536, LOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143I02.T7 (MSMg01no143_i02.b1)MSMg01-143I02.TJ (MSMg01no143_i02.g1)
ACCAG347834AG347835
length678675
length of high quality
(start - end)
242 (74 - 315)232 (76 - 307)
definitionCHROMAT_FILE: MSMg01no143_i02.b1 PHD_FILE: MSMg01no143_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:05 2005CHROMAT_FILE: MSMg01no143_i02.g1 PHD_FILE: MSMg01no143_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAGCGCGGCGGA
ATCATAAGATGTTACAAAATAAGTCTATTATCATTATTTCTCTTGAGAAA
ACAATATACATCCAATAATTACCCAAAATATCCTACTTTTTAAGGCACAT
ATATTATGCAATCTAAAAATCACTAAAGAACTGAGAAGATGGCTACAAAA
TGGGAGAAATAATAAGTCCAGAAATAGAGACTTCCAAGAAAACAGTGTAT
CTTAGCAGAAATTCTCTCCACTGCCTGAAGAAAATCCCAGGGAGATCATA
ATCCTACACAAATAGATTAAGTAGAATTGAGGAACCGGGGGAGTCTGTGG
CATTGTGGACTAATGTCCCTATCAGAAAATCAAGTGTCCCATTCACCCAC
AAAGAAGGAAGGTCCAACCACGCACGACAGGCAGTTGATGATTTTATGAG
CATTGATTTGGCTCAGACTTGTCCACATACGGTGATCCTGCTGCTGGAGA
GGGACCTGCTAAGGTTGCTTATGTTAGAAAGACCTGGCGAAGAAAGGCGG
CCGTTACTCAAGGCCTAATGGTTCACCCGGGACCCCGGGTTCGATTTACG
GACCGCGAGACAATTTCCCGCCACCCCCAGAATTTTTTCTTTCCCACGAG
GTCCCCCGGCATCAACCAATTCATTTCN
CCACATGCAGTGTTAGCCTGGNGGCGCCTGGGTTCGAACCGCANNGAACN
ANAGAAGTTAACCNGAGGGGCACCNGAGGAAACCGAAGGGCAGAGAAGCA
CCTGAAAAAATGTTACCCATCCTTAANCANCAGGGAAAGGCAAAGCAAAA
CAACCCTGAGGTTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAATTTTTCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGCCC
GGCGGCTCCTTTTATAATTTAACANAGNACNACCGGAGGAACCAGCAAAA
CCTCTCTTGCACCCCCCCCAGAAGAGGCCCCAACGGGGAAGAAGGACACA
CGCCCCACCACCGACAAAGCAGACCAACGAACAACAGCCAGAGCCCGGAA
AGAACCCAGAAGACCCCCCCAAGAAAAAAGCACACCCGAAAAGGGGCACA
ACCACACAACGCAAACACAACCCCCCCACCAACAAGAAAGCACAGCCCCC
CANACCAAGCCGCAACGGACGGACCCGGAAGGACAACAACCAGACAAGAA
GGGCAAGAGACCAAAAGGAACCCACACCCGCAAGAAACACCCCGCTTTTT
TTTTATTTCGCCCCTTTCCCTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_i02.b1 MSMg01no143_i02.b1 CHROMAT_FILE:
MSMg01no143_i02.b1 PHD_FILE: MSMg01no143_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:05 2005
         (242 letters)



>mm_chr19_51743994_51744636
          Length = 643

 Score =  400 bits (207), Expect = e-116
 Identities = 234/243 (96%), Gaps = 1/243 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctattatcattatttctcttgagaaaacaatatacatccaataattacccaaaatatcc 60
           |||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||
Sbjct: 201 tctattatcattatttctctagagaaaacaatatacatccaagaattagccaaaataccc 260

                                                                       
Query: 61  tac-tttttaaggcacatatattatgcaatctaaaaatcactaaagaactgagaagatgg 119
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatttttaaggcaaatatattatgcaatctaaaaatcactaaagaactgagaagatgg 320

                                                                       
Query: 120 ctacaaaatgggagaaataataagtccagaaatagagacttccaagaaaacagtgtatct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ctacaaaatgggagaaataataagtccagaaatagagacttccaagaaaacagtgtatcg 380

                                                                       
Query: 180 tagcagaaattctctccactgcctgaagaaaatcccagggagatcataatcctacacaaa 239
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 aagcagaaattctctccactgcctgaagaaaatctcagggagatcataatcctacacaaa 440

              
Query: 240 tag 242
           |||
Sbjct: 441 tag 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)