BAC Information

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BAC

Clone NameMSMg01-143I04
Chromosome19 (Build37)
Map Location 10,638,195 - 10,638,435
singlet/doubletsinglet
Overlap genenone
Upstream geneStxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik
Downstream geneTmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143I04.T7 (MSMg01no143_i04.b1)MSMg01-143I04.TJ (MSMg01no143_i04.g1)
ACCAG347838AG347839
length695706
length of high quality
(start - end)
241 (72 - 312)158 (77 - 234)
definitionCHROMAT_FILE: MSMg01no143_i04.b1 PHD_FILE: MSMg01no143_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:05 2005CHROMAT_FILE: MSMg01no143_i04.g1 PHD_FILE: MSMg01no143_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGCGCGGCGG
AATTCTCAGGTTTACCGCAAAACCTTTACCTTTTGAGCAATCTCACCAGC
CTCTCTTTGGTTGTTTTTTGGAGAGTCTTGTGCAGTCTATGCTAATCTCA
AACTCCAGCTATTCTTGTTTTAGCATCTTGAGCTGTGAGATTACAAGTAG
GAGCTAACTGTGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGCAG
GCAGAGGCAGGTAGATTTCTGAGTTTGAGGCCAGCCTGTTCTACAAAGTG
AGTTCCAGGACAGCCTGTTTTACACTGAGAAATCCTGTCTCGAAAAACAA
ACAAACAAACACTATAATCACCCCTAACAAACTAACAAACAAAACCTCTA
AAACCAAGCTATTTTGCCACCCCCTTGTTTTGCCCAAACAAACCAGAAGT
GAGCTACCCTTTGTTTAATGGTAGGTTGTTGCCTGTGGGTACTCTATTTT
GGAACCCGACTTTCAGTTTTGTTGAGTATACTTTTCTATTTCCCCCACCG
CACTGTGAGTCGTGTCGATAGTATATTTGCGAGAGTTTTCAGCAATGTCA
AACACGCTTCTTCCTACACCTCTATATTTCTTTCCTCTCCGATCACCCTT
CTTTTATTATCCCACGAATTTCCACATAAAATAAAATGAGATTCG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGCCAGTCTGGTCTACATACTGAGT
TCTAGGACAGCCAGAGGTACACAGAGAAGCCCTGTCTCACATACACTCCT
CAAAAGGAGATTTGCTTTCAAATAAGTACTGAGGGCTGTGGACCTGACTC
ATGTTATCAACAACTATTACTGACAGTACTTGGTAAGAAGGTCAGTGTCG
CCGGGCGATGGTGGTGCACGCCTTTAATCCCAGAACTTGGGAGGCCGAGG
CAGGCACATTTCTGATTTTTATGTCAGTCTGGTCTACTAAGTGAGTTCCA
GAACAGCCTGGGCTACCCAGAGAAACCCTGTCTTGAATAATAAACATTAT
CATAATGTCATTGGCCCCCCACCTTTTGGTGACATAAAACCCTCCAGGAA
AGGGGATAGTCTATGTAACGCTTCGACAAGGATTTAACCACACACCGCAT
AGCATGTCACCATCTAATGAGTACCCAATGTGATCGAACCCCCCCCAACT
TTATTCTGCTTCCCACCATTTTTGACGCCACCTCCCTTACCTTTCCCAAC
TACCTTAATTTTGTTTTACATTACCTATTAATATATACTCTCCTCTCTCA
ACCTCCCTAGCGCCACGCCTTGCCTTTATTATTATTTCCTACTCTTTTAT
TCACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_i04.b1 MSMg01no143_i04.b1 CHROMAT_FILE:
MSMg01no143_i04.b1 PHD_FILE: MSMg01no143_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:05 2005
         (241 letters)



>mm_chr19_10638102_10638742
          Length = 641

 Score =  427 bits (221), Expect = e-124
 Identities = 236/241 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctttaccttttgagcaatctcaccagcctctctttggttgttttttggagagtcttgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 334 acctttaccttttgagcaatctcaccagcctctctttggttgtttttttgagagtcttgt 275

                                                                       
Query: 61  gcagtctatgctaatctcaaactccagctattcttgttttagcatcttgagctgtgagat 120
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gcagtctaggctaacctcaaactccagctattcttgttttagcatcttgagctgtgagat 215

                                                                       
Query: 121 tacaagtaggagctaactgtgcagtggtggcacatgcctttaatcccagcacttggcagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 214 tacaagtaggagctaactgtgcagtggtggcacatgcctttaatcccagcacttgggagg 155

                                                                       
Query: 181 cagaggcaggtagatttctgagtttgaggccagcctgttctacaaagtgagttccaggac 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 154 cagaggcaggtagatttctgagtttgaggccagcctggtctacaaagtgagttccaggac 95

            
Query: 241 a 241
           |
Sbjct: 94  a 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)