Query= MSMg01no144_h02.b1 MSMg01no144_h02.b1 CHROMAT_FILE:
MSMg01no144_h02.b1 PHD_FILE: MSMg01no144_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:16 2005
(659 letters)
>mm_chr19_32716258_32717316
Length = 1059
Score = 1166 bits (603), Expect = 0.0
Identities = 645/663 (97%), Gaps = 11/663 (1%)
Strand = Plus / Plus
Query: 5 gaattctaagctgctctctaagaatttccttcctggagtcccctgcagtcctcagacatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattctaagctgctctctaagaatttccttcctggagtcccctgcagtcctcagacatg 257
Query: 65 gatttttctatttcaagaccgtggggaaatagctgccaggtagggaagacgttctttaga 124
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 258 gatttttctatttcaagaccgtggggaaatagctgccaggtagggaagaagttctttaga 317
Query: 125 ctcacactgaatgtataatcctgggcaaggctttaggcctattaggaagaaaagaccaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctcacactgaatgtataatcctgggcaaggctttaggcctattaggaagaaaagaccaaa 377
Query: 185 tcagatgctcggtctttggaaagattctctgggactgaggctgttgcctagggaatggcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 378 tcagatgctcggtctttggaaagattctctgggactgaggctgttgcctagggaacggcc 437
Query: 245 cagaagcagaattctaagacagactagagcacacctttatccctctgctgtgactgagca 304
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 438 tagaagcagaattctaagaccgactagagcacacctttatccctctgctgtgactaagcg 497
Query: 305 tgcc------ccatga--cctttgtttcc-acgattaagcaccatccaaaagcacacttg 355
|||| ||| || ||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 498 tgccccgcgacca-gaagcctttgtttccga-gattaagcaccatccaaaagcacacttg 555
Query: 356 atttaagcctaccttgctgcaacaggcactgttttgtttgatttttataaaatctctaga 415
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atttaagcctaccttgctgtaacaggcactgttttgtttgatttttataaaatctctaga 615
Query: 416 aaatacccacttctcagaggaggacactgagctcagaatcaatgctcacatttttttttc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aaatacccacttctcagaggaggacactgagctcagaatcaatgctcacatttttttttc 675
Query: 476 cagagctgaggaccgaacccagggccttgagcttcctaggcaagcgctctaccactgagc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cagagctgaggaccgaacccagggccttgagcttcctaggcaagcgctctaccactgagc 735
Query: 536 taaatccccaacccccaatgctaacattttaaagcttataagcgatgccccatgaccaca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 taaatccccaacccccaatgctaacattttaaagcttataagcgatgccccatgaccaca 795
Query: 596 gtcagaactcctgtctagtacgccttctgcaccaggctgctctccaggtgtcctttccaa 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gtcagaactcctgtctagtacgccttctgcaccaggctgctctccaggtgtcctttccaa 855
Query: 656 tgg 658
|||
Sbjct: 856 tgg 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_h02.g1 MSMg01no144_h02.g1 CHROMAT_FILE:
MSMg01no144_h02.g1 PHD_FILE: MSMg01no144_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:16 2005
(273 letters)
>mm_chr19_32870419_32871091
Length = 673
Score = 513 bits (265), Expect = e-150
Identities = 271/273 (99%)
Strand = Plus / Minus
Query: 1 ccttctccctccacctccaagtgttagaactccacacagggaagccaggttctgctcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ccttctccctccacctccaagtgttagaactccacacagggaagccaggttctgctcttc 414
Query: 61 tgagaggtgctgtgtggtgaagagcccacagtggaagacagtcaagaattaaggatacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgagaggtgctgtgtggtgaagagcccacagtggaagacagtcaagaattaaggatacaa 354
Query: 121 tcaggaaacaagaggaagctaggcacataccctaagaagccggttgttagtgtcctacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcaggaaacaagaggaagctaggcacataccctaagaagccggttgttagtgtcctacaa 294
Query: 181 gtcagatttttcagtttgccacactttctggtctagggtcagggatcccaattgcctgtg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 293 gtcagatttttcagtttgccacactttctggtctagggtcagggatcccaattgcctgcg 234
Query: 241 gaggtgatgcaggtaaggggagaggaggggaag 273
||||||||||||| |||||||||||||||||||
Sbjct: 233 gaggtgatgcagggaaggggagaggaggggaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
