Query= MSMg01no145_d20.b1 MSMg01no145_d20.b1 CHROMAT_FILE:
MSMg01no145_d20.b1 PHD_FILE: MSMg01no145_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:16 2005
(570 letters)
>mm_chr19_52615090_52616059
Length = 970
Score = 1073 bits (555), Expect = 0.0
Identities = 569/577 (98%), Gaps = 7/577 (1%)
Strand = Plus / Plus
Query: 1 taataagaagg-acattaggtcaagggtcttgctatagggccagatgaccagagtttgat 59
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 taataagaaggcacattaggtcaagggtcttgctatagggccagatgaccagagtttgat 253
Query: 60 cagtaggaccaacataatagtagagaacagatctcctctgaattccaaagacagcatgtg 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 254 cagtaggaccaacataatagtagagaacagatctcctctgacttccaaagacagcatgtg 313
Query: 120 tccccacacgaagtaagtaaataaacactaatacttgtatgtccttatatggcataaata 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tccccacacgaagtaagtaaataaacactaatacttgtatgtccttatatggcataaata 373
Query: 180 tagataatgaaacaataaaattattagctaatcattaatgggtttgacttttttatgcta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tagataatgaaacaataaaattattagctaatcattaatgggtttgacttttttatgcta 433
Query: 240 tgaacattttcctaatgtattttatcatcaaataagccttacacaataggtgcttttatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgaacattttcctaatgtattttatcatcaaataagccttacacaataggtgcttttatc 493
Query: 300 attcccatttcacagataaggtacctgaagtcaatatgatgcccaatctaaccatgtatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 attcccatttcacagataaggtacctgaagtcaatatgatgcccaatctaaccatgtatt 553
Query: 360 gttaagtgaaaaaaaaaaaaa------gctctaagtcttagacatatttatgagagcttt 413
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 554 gttaagtgaaaaaaaaaaaaaaaaaaagctctaagtcttagacatatttatgagagcttt 613
Query: 414 gcctcttggtgttaccaagtccttaaaagtaatacttattacataaaagaaatggtgaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gcctcttggtgttaccaagtccttaaaagtaatacttattacataaaagaaatggtgaaa 673
Query: 474 ggtaaaaatttttattaaaagctgtatttatttttattttatatttatgtatactttggc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggtaaaaatttttattaaaagctgtatttatttttattttatatttatgtatactttggc 733
Query: 534 tcttttggaggtagaagaggatgctgaatccttaaga 570
|||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcttttggaggtagaagaggatgctgaatccttaaga 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_d20.g1 MSMg01no145_d20.g1 CHROMAT_FILE:
MSMg01no145_d20.g1 PHD_FILE: MSMg01no145_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:16 2005
(597 letters)
>mm_chr19_52742999_52743996
Length = 998
Score = 1040 bits (538), Expect = 0.0
Identities = 583/598 (97%), Gaps = 1/598 (0%)
Strand = Plus / Minus
Query: 1 ctcatcaaactatagtgtgctcatctgtaaaacaggaaaatcgcgtaatccagttgcccc 60
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 798 ctcatcaaactatagtgtgctcatctgtaaaaccggaaaatcgcataatccagttgcccc 739
Query: 61 aaggctcaacccgacatacacagtgcttaataaatgttaaagtaacag-tttttacaata 119
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 738 aaggctcaacccgacatacacagtgcttaataaatgttaaagtaacagttttttacaaca 679
Query: 120 aacttgtgactagttttaggtcatctacatgtcaaacaccaagatacattgattggcagt 179
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 678 aacatgtgactagttttaggtcatctacatgtcaaacaccaagatacactgattggcagt 619
Query: 180 tgtcaaaacgcaaaacacagttccgacctccaaggagtttaccactcttgaaaaaggaac 239
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 618 tgtcaaaacgccaaacacagttccaacctccaaggagtttaccactcttgaaaaaggaac 559
Query: 240 aaaggaaagccatctagactaaagtctgtgagtctctgcaggtgctctgaggatggaaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 558 aaaggaaagccatctagactaaagtctgtgagtctctgcaggtgctctgagtatggagag 499
Query: 300 agggaagacagtgagttgaagatggggtggacagtggagatcttcgcccccctcatgaaa 359
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 498 agggaagacagtgagttgaagatggggtggacagtggagatctttgtgtccctcatgaaa 439
Query: 360 tgtaagcatctgaaattcttcatctccatcatgagtttataggaacaggccatatattat 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 438 tgtaagcatctgaaattcttcatctccatcatgagtttataggaacaggctatatattat 379
Query: 420 tgatttagagatgataaaatctgtgctgttatcaagacaaaagatgtaattgaggcagtt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgatttagagatgataaaatctgtgctgttatcaagacaaaagatgtaattgaggcagtt 319
Query: 480 tctgggattcttctcttgctgtagtgaccacgatctttgctacagaagcttggtttcttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tctgggattcttctcttgctgtagtgaccacgatctttgctacagaagcttggtttcttt 259
Query: 540 caaatttgcaatgagttgttcaagctaaaatttacagactgatttttagaataaattt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 caaatttgcaatgagttgttcaagctaaaatttacagactgatttttagaataaattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 998
Length adjustment: 10
Effective length of query: 587
Effective length of database: 988
Effective search space: 579956
Effective search space used: 579956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
