Query= MSMg01no146_c23.b1 MSMg01no146_c23.b1 CHROMAT_FILE:
MSMg01no146_c23.b1 PHD_FILE: MSMg01no146_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:39 2005
(669 letters)
>mm_chr19_45895085_45896153
Length = 1069
Score = 1158 bits (599), Expect = 0.0
Identities = 653/683 (95%), Gaps = 22/683 (3%)
Strand = Plus / Plus
Query: 1 ctaggaccacccttgaatctcttccgttccctgcctttcctgaccagaccagcctggaca 60
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 191 ctaggaccacctttgaatctctttcgttccctgcctttcctgaccagaccagcctggaca 250
Query: 61 taaagacctatatactgtggctatggtcgccactgtccctgacaccgccagtgtacgctt 120
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 251 taaagacctatatactgtggttatggtcgccactgtccctgataccgccagtgtacgctt 310
Query: 121 agcctctgcatatggcttcctctggtcaggt----------actgagtatgcctaagtgc 170
||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 311 agcctctgcatatggcttcctctggtcaggttgtcccagatactgagtatgcctaactgc 370
Query: 171 ttctcccttcctggaaaccatctttcttcagccctgggatgttccttagcaccatctgcc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttctcccttcctggaaaccatctttcttcagccctgggatgttccttagcaccatctgcc 430
Query: 231 acttgttttcacctctcaatgccagcccatcattcttatccaccttctgtattttac--- 287
||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 431 acttgttttcacctctcaatgccagcccatcattcttatccaccttctgga----acaaa 486
Query: 288 -ttttgagtatccaagcactgagttacagtggacactgacggggcgaaggggtgtgcatc 346
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 487 cttttgagtatccaagcactgagttacagtggacactgacggggcgaaagggtgtgcatc 546
Query: 347 tcctcaacaatgctgctcgctctgacttttgtttttgagacagggtcttgctatatagtc 406
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcctcaacaatgctgctc----tgacttttgtttttgagacagggtcttgctatatagtc 602
Query: 407 taggctggcctgaaactcactacatggctctgtttggtctataattttttatcttcctgt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 taggctggcctgaaactcactacatggctctgtttggtctataattttttatcttcctgt 662
Query: 467 ctcacctcttgatatctgggcttataagtgtctactaccacacttgacccacttggcctg 526
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 663 ctcacctcttgatatctgggcttataagtgtctactaccacacttgacctacttggcctg 722
Query: 527 attctctatggggtaaggagtcaaaattcaaatgactttgggatccctggatatctgagg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 attctctatggggtaaggagtcaaaattcaaatgactttgggatccctggatatctgagg 782
Query: 587 ttaataataaacagtctgaaagccaaacttgatgtgacttgagtttctaagactctgaat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ttaataataaacagtctgaaagccaaacttgatgtgacttgagtttctaagactctgaat 842
Query: 647 caaacaaaagcaagggtggggca 669
|||||||||||||||||||||||
Sbjct: 843 caaacaaaagcaagggtggggca 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_c23.g1 MSMg01no146_c23.g1 CHROMAT_FILE:
MSMg01no146_c23.g1 PHD_FILE: MSMg01no146_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:39 2005
(644 letters)
>mm_chr19_46041349_46042392
Length = 1044
Score = 1147 bits (593), Expect = 0.0
Identities = 620/629 (98%)
Strand = Plus / Minus
Query: 16 aagccccaggatcttcctgtctttgtcttcccggtgctgtgattacaggatgcactactg 75
|||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 826 aagccccagggtcttcctgtctttgtcttcctagtactgtgattacaggatgcactactg 767
Query: 76 tgctaaacctacatttttctggtgtgcccgtgcatgcgtgtgtgcgtgcgtgtacatgtg 135
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 766 tgctaaacctacatttttctggtgtgccggtgcatgcgtgtgtgcgtgcgtgtacatgtg 707
Query: 136 agttgaggctaggagttgatatcaagtgtcttgttattactttattaataaacttcacta 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 agttgaggctaggagttgatatcaagtgtcttgttattactttattaataaacttcacta 647
Query: 196 tatttattgatttgtgtgtgtgtttgtgcacatgcatgccatggtatatgtgtggaggtc 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tatttattgatttgtgtgtgtgtttgtgcacatgcatgccatggtatatgtgtggaggtc 587
Query: 256 agagaaattgaaattgcttttgtctttcccattaaactaaaaacctgttgaaagtagata 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agagaaattgaaattgcttttgtctttcccattaaactaaaaacctgttgaaagtagata 527
Query: 316 tctaggtcttactttgaaagtatagggtagatgctcacatgttcatttgactgaagtatc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tctaggtcttactttgaaagtatagggtagatgctcacatgttcatttgactgaagtatc 467
Query: 376 ttatattttattttaattttgagacagggtctttatgtttcgcagtcttgggtatcctgg 435
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 466 ttatattttattttaattttgagacagggtctttatgtttcgcagtcctggttatcctgg 407
Query: 436 aactcagtgacttgctatgtattttagacaacgctttccctgcctctgcctctgcccccc 495
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 406 aactcagtgacttgctatgtattttagacaacgctttccctgcctctgcccctgcccccc 347
Query: 496 cagtgctggggttaaaggcgggcatcagcacatccagctgaaacatcttgttttgaaatc 555
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 346 cagtgctggggttaaaggcgggcatcagcacatccagctgaaacatctcgttttgaaatc 287
Query: 556 ccagcattctgagtccttaattttactcttcaaaaaaaagatttatttgttttatgtata 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccagcattctgagtccttaattttactcttcaaaaaaaagatttatttgttttatgtata 227
Query: 616 tgaggtttgttttgtttttgcctgcatgt 644
|||||||||||||||||||||||||||||
Sbjct: 226 tgaggtttgttttgtttttgcctgcatgt 198
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
