BAC Information

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BAC

Clone NameMSMg01-146E17
Chromosome19 (Build37)
Map Location 41,331,865 - 41,433,888
singlet/doubletdoublet
Overlap geneTm9sf3, Pik3ap1
Upstream genePdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2
Downstream geneLOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146E17.T7 (MSMg01no146_e17.b1)MSMg01-146E17.TJ (MSMg01no146_e17.g1)
ACCAG349872AG349873
length1,2421,266
length of high quality
(start - end)
305 (415 - 719)595 (147 - 741)
definitionCHROMAT_FILE: MSMg01no146_e17.b1 PHD_FILE: MSMg01no146_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:54 2005CHROMAT_FILE: MSMg01no146_e17.g1 PHD_FILE: MSMg01no146_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,433,584 - 41,433,888)(41,331,865 - 41,332,459)
sequence
CCCTCTCTTTGNNNATCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGCTGCTGTTGGACGCCCTTTTAACAGGTTGAAACAGTA
TCCCCAGTCCAACAGCTCCCTTTCCAGACTTCTGACCCCCCACTGAAAAC
CCCTGAACAAACCCACTGCACCACTGTGGTATGGCAAAAGAAAGGCTGGA
TTCCATGGTCTACGTGACAAAGATCTGGAGGTTTGAGAGGACCACAACCA
AGGCAGTGTGCTGTGTGAAGAGGCAGTCTCCAGTTGGTTTTCAGAACAGT
GGTCAGGTGCTGAAAAGTGACAGCCTTTCCAATAGTATACTCTTGTCATC
TATCTAGAGTGGCCATGGATGGGACGTGAGGGCTGTACAGTTAGATGCAG
GGATGTATTATGTTGTGTCCAGGTCAGGGCTGTCCCCTGAACGGTTTGCT
TACCAATTCACCATCTCATGGATTGTAAGGAGAACCTCCTACCTTGGTTG
AAAGAAAAATTAACAACACTAAAGAAAGGATTAGAGTGCTGCTGATCCTG
GGATATCTGCAACCAAGGACTTGAACTGTGTGTTACTCTGACTCTTGTCC
CATGTCATATCTCTGGTGGATTGTCCCCAAGAGGAGGAATTAGGGCCCAA
GGATCATCTCAGCTCCCTGACTTACTTCATTATTTCCAGCCCCAAGAGGA
TTTGATGCTCATTCTTTCTGGTTCAGAAACTGAAATAGACTGGTCAAGGG
TCACATGATCCTAGTGTATTGGTGATGATAGGAGAGCGGAGAGTTTCATA
ATAGTCTGTTCTATACAGCTCGTTCTATACCAGCCTCATCCAACTGTCAT
CATAACAAGATACCCTTTCTCCCCTCCTCCTTTCTCCCCTTCCTTCCTTC
TTTCCTTCTTCTCTTTCTTTCCTTTGTTTCTTCCTTAATTCCTTCCTTTT
TCATCTCCTCTTCCCCCCCTAGTTTATACTTTTTTTTAACAAATTATTTT
TTTTTTTTAATTTTCCTTTCTTTAATTTTTCCTCTTTAATTAATATAATT
TCTTTCCCTTACCCATCTTATTTTCTTTCACTATCCTTTATTTCTTCATC
TCCTCATTCCCTTTTTATCTTAACATTTTTTCTTCTAACTTCTTTACTTC
TTTCTTCTTCTCTTTTCTTATTTATCTTCTTATACTATTTTATCATTTCA
CTTTTTATCTTATTTGATTTTCTTATTAATTTTGCTTATAAT
NCCACCCTTTNTTNNAAGATGGNAGNCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAACTCTGAAAGAGNAG
NCAGGATCTCTTCCTGCCCCCTTTAAACTAGTTACTCCCGCCTCCAGAAT
TTCACTGCAACACTGGTCTGCACTGCCCGCTCCAGTCAAAATGCCTTAGC
ACTCTCTTCCTTTCCAAATGTACTTCACCTCTTTTCTTCTCTTTCCCTGA
AATCCACAATGCCCTTCTTTTCTTCAATTAGTCAAATCCTACTTGCCCTT
CAGATATGCCTACTGCCCCTTACTTAACTCCGCGGGTGAAGCTTTAGCTG
ACCATCCTTGCACGGCTTCCATGACAGCTCGACGCTAGCTGCCACTTTAT
AACTACACTTTTGGAGCTAGGCGCGGGCCTAAAGTCTTTCTGTAAACATG
GAGCCTTCTCAAAACTGCTAGGCCGTGTTATTTCACCACGTTTACAGATT
CAAAGGGAAAACAAGAGAGATGCTAAGTAATTTGTTCAAGTCAGGCATGG
TGGAGCACACCTGTAATCACAGCCTTTGAAAGCTGATGCGGAGGCAAGGA
AGTCAGAGCCAGCGCAGGCTCCATACCAAGTTCTAGGTCATCCTTGGCTA
CCTAGAAAGACCTTGTCTCGTAAATAAATTGTTCAAGCCTCTGTAATTAT
TATTTTACAAACTAGGACTTTGCTGTTGTTGACTTCCAGATAGTTTTTAA
ACAAAAAGAATAAATTTAAAAAGGTAGCTGTACAAAGCAACACAAGTGTA
CAGCACTCAGTGCCAAACCATCTTTTCATTTGAGCTTTAGTCTGCTCTAC
AGTAAAAGATCCTGAGACGTTATTAGCATTCTAATCTCATTAGTTCAAGA
CCTTCTTTCAAGCTAACCCATTGTTGGCCCCTGCTCCATCTGTTTAGTTT
TTAAGAAAAGATTTGCCAATTTTATTTCCTTGATATATACTTATTTTCCC
TTTTTCCCCCTTCCCGTAAATAAATCTGCTTAAAAATGTGTTGAATTTCT
TTTTTAACTTAAATTATAAACTTCTTAATTTTTTTGTTTTCTCCCTGATT
AATAAATTATTATCATTATGGTTTCTTTGCTTATCTTTTTTTTCTTTTTC
TAAAACTTCTCTTGGTTTTTATAATTTTGTTTCTCCTATTATAAATAATT
ATTGCTTTATCTTCTGTCACAATATCTCTTCACTCTCTTTTCTGTTCTAC
TCTCATTATTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_e17.b1 MSMg01no146_e17.b1 CHROMAT_FILE:
MSMg01no146_e17.b1 PHD_FILE: MSMg01no146_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:54 2005
         (305 letters)



>mm_chr19_41433384_41434088
          Length = 705

 Score =  543 bits (281), Expect = e-159
 Identities = 299/305 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtccaggtcagggctgtcccctgaacggtttgcttaccaattcaccatctcatggatt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 gtgtccaggtcagggctgtcccctgaacggtttgcttaccgattcaccatctcatggatt 446

                                                                       
Query: 61  gtaaggagaacctcctaccttggttgaaagaaaaattaacaacactaaagaaaggattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaaggagaacctcctaccttggttgaaagaaaaattaacaacactaaagaaaggattag 386

                                                                       
Query: 121 agtgctgctgatcctgggatatctgcaaccaaggacttgaactgtgtgttactctgactc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 agtgctgctgatcctgggatatctgcaaccaaggacttgaactctgtgttactctgactc 326

                                                                       
Query: 181 ttgtcccatgtcatatctctggtggattgtccccaagaggaggaattagggcccaaggat 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 ttgtcccatgtcatatctctggtggattgtccccgagaggaggaattagggcccaaggat 266

                                                                       
Query: 241 catctcagctccctgacttacttcattatttccagccccaagaggatttgatgctcattc 300
           ||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||
Sbjct: 265 catctcagctccctgacttacttcattagctccagccccaagaggagttgatgctcattc 206

                
Query: 301 tttct 305
           |||||
Sbjct: 205 tttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no146_e17.g1 MSMg01no146_e17.g1 CHROMAT_FILE:
MSMg01no146_e17.g1 PHD_FILE: MSMg01no146_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:54 2005
         (595 letters)



>mm_chr19_41331665_41332659
          Length = 995

 Score = 1089 bits (563), Expect = 0.0
 Identities = 587/595 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatttcactgcaacactggtctgcactgcccgctccagtcaaaatgccttagcactctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatttcactgcaacactggtctgcactgcccgctccagtcaaaatgccttagcactctc 260

                                                                       
Query: 61  ttcctttccaaatgtacttcacctcttttcttctctttccctgaaatccacaatgccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctttccaaatgtacttcacctcttttcttctctttccctgaaatccacaatgccctt 320

                                                                       
Query: 121 cttttcttcaattagtcaaatcctacttgcccttcagatatgcctactgccccttactta 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttctgcaattagtcaaatcctacttgcccttcagatatgcctactgccccttactta 380

                                                                       
Query: 181 actccgcgggtgaagctttagctgaccatccttgcacggcttccatgacagctcgacgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actccgcgggtgaagctttagctgaccatccttgcacggcttccatgacagctcgacgct 440

                                                                       
Query: 241 agctgccactttataactacacttttggagctaggcgcgggcctaaagtctttctgtaaa 300
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 441 agctgccactttataactacactccaggagctaggcgcgggcctaaagtctttctgtaaa 500

                                                                       
Query: 301 catggagccttctcaaaactgctaggccgtgttatttcaccacgtttacagattcaaagg 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catggagtcttctcaaaactgctaggccgtgttatttcaccacgtttacagattcaaagg 560

                                                                       
Query: 361 gaaaacaagagagatgctaagtaatttgttcaagtcaggcatggtggagcacacctgtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaacaagagagatgctaagtaatttgttcaagtcaggcatggtggagcacacctgtaa 620

                                                                       
Query: 421 tcacagcctttgaaagctgatgcggaggcaaggaagtcagagccagcgcaggctccatac 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcacagcctttgaaagctgatgtggaggcaaggaagtcagagccagcgcaggctccatac 680

                                                                       
Query: 481 caagttctaggtcatccttggctacctagaaagaccttgtctcgtaaataaattgttcaa 540
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caagttctaggtcattcttggctacctagaaagaccttgtctcgtaaataaattgttcaa 740

                                                                  
Query: 541 gcctctgtaattattattttacaaactaggactttgctgttgttgacttccagat 595
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 gcctctgtaattattattttacaaactaggactttgcttttgttgacttccagat 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)