BAC Information

Click to search

BAC

Clone NameMSMg01-146N22
Chromosome19 (Build37)
Map Location 10,919,122 - 10,919,687
singlet/doubletsinglet
Overlap geneSlc15a3
Upstream geneLOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6
Downstream geneTmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146N22.T7 (MSMg01no146_n22.b1)MSMg01-146N22.TJ (MSMg01no146_n22.g1)
ACCAG350292AG350293
length1,2051,187
length of high quality
(start - end)
566 (138 - 703)575 (124 - 698)
definitionCHROMAT_FILE: MSMg01no146_n22.b1 PHD_FILE: MSMg01no146_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:09 2005CHROMAT_FILE: MSMg01no146_n22.g1 PHD_FILE: MSMg01no146_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACCCTAGTNNTTAATCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTTTGTAGAACAGGCCTATAAAAGCCCTCAGAAATCCG
CCTGCCTCTGCCTCTCACCTTTTGGGATTAAAGGCCCGCACCACCACCGC
CCAGCTCTACTAGCCCCTGTTAATAGTCAGCCATCCCTATCTACGCCAGG
GTTTCAGGGCAGTTGGGAGTGGGTAAGTAGGTGGGATATCAATCAAAGAG
TACAAGTTAATAGAAGAAGGAACATTCCTTTCAGTGAGTGTTGGGAATCT
CCTGGTCTCAGGATGTTCACCAACCTCTATAACTCAAACTCCCAGGGACC
TGGCATCTTCTGTAGCCTCTCCTATGCATCTGCTCACATGTGTGCACATG
GACTCTTTTGCAAAGACACAAACACACATAAGCAATACAATAAGTGCTAT
TAACAATCATGGGAAGTCCTTAGTAAAGGACTCTGGTCACAGTAGGGGCG
CTGGATTGTGGATGCCAGCCAGAAGACACCTCATTTAAAACTGTGAGTGC
TTTTGAGGAGGGCAGAGTAAATGAGAGAGAAGTACAGAGCGCCCAGTAGC
CTGAACACACTGCCACTGTCACCTGTCCCCCCTTCTATGGACACCTCATC
TTTCCCATGGCTGTCTATTTGTGTTTCTGCATTCCACCTGTGATTATTCA
CACCGTGTGTGGTTGCTTTAATAATATCCCTTCCTAGTGTTTATTATCAA
CAATCCCACTTGTGCACAGCTACCCTAACGGAGCCTTGCTGGCAAGACTT
TGTCAGTCATTTACCCACTGCCCTCTGGTGTTTCTGGTTGATAAAAGGTT
GTCTGTCTCCTGCACCTGCCCCCCAGTCCCCTTTGGACACTCTCTTAATG
GTTTTCATGCCAGGACCTGTAGAATCAACTTGTTTCACCGTCCCTTCGGA
ACCGGCTCTTCGGTCACCTGAAGAAAATTTGATGGGTCTTCAACTCTTCC
TTCCCTTGGGGTCTTATTTTAAAAGGACCCCTCTTTATTCTCCTGCATTT
GGATATCTTCTTTTGTTCTGTTTTCCGCCTTTTTAAACACCTTATCCCTC
CTTGTAATTCTTATAATCAGTTTACTCATTTCCTTTTATGTATTCTAGTC
CACTTCTGTGGGCTTTCTTCCTTGTTTATCTTTCATATACTTCTTCTTGT
TCTTA
GCCTCTTTTNNAAAACAAGGNAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCAATAAAGTTCCGCTTCCCAGAGCCCT
GGGATTCCAGGCCCTTTACATCATACCTGACTGGTTTTTCTTTCTAGACT
CGTCAGATTCACTGGTGGTTGCCAGGGTCAGGACAGAGGAAAAAAAGTGT
TAATATTTAATGGGTGCAGGTGTATCAGTGCGGTGTCATGAAAAGTTCTG
GAGACAGATGGACTGGTACCAATGGTTGTACAACAAAGTAAATGTATCTA
AATGTCAAAAACCATACTTCAAAATGGCTAAAACGGGGATGGAAAATGGC
TTAGTGCGGTGGTTCTCAACCTTCCTAATGCTGCGTGCGACCTTTAATAC
TCTTACTCGTGTTGTGGTGACTCTTACCGTAGAACTATCATTTTGGTACT
GTTATGAATTGTAATGTAAATATCTGTTAAAGGGGTTTTTACCCACAGGC
TGAGAACCACTGGCTTCCTGGGTACTGGCATCTGCCTCCAAGCCTGGAGA
CCTGACTTTACTGCCCAGGATCTACTTGTTGGAAGGAGAGACCGGACTCC
TGCAAGTTGTCCTCTGATCTTCACACACATACTGTGGCACTGTGCACCCA
CATACATTCACACATTATTAATGAATATAAAAAAATAAAAATGACTAAAA
TGATAGGTTTTATAAATATTACAGTTAAAGAGTAAAACTTATGGCATGGC
TTTAAAATTTTATAGAGCTTTAATATTGAAGGTGGATTTCTTACAGGCAG
TACACAGAAGGGTGTTGCTTTTTTATTTTTTTTAATAAGTCTTATAATTA
TTGTCTTTAATTTTTTTTTAAATTTTATTTTATGTGCATAGGTATTTTTG
CCTGCAGGTATATTCTATATATTGCTTGTTAGGCCCAAAGCCAATGTTTC
CCTTTATATTCCCTTGGTAATTATAGTTTTACAAATGGTTTGTTGAACTT
TCTCTGGGCGTTATTTTGTCAAACTGTATCCCTGTTTTCCCTTTGGCTAA
AAACCTTTTTTATTTCCTTTTTAAATCTTCTGTGATCTTCTGTTTTTTTT
CTTCCCCTCCTAGGGTGATCTCCTTTTTTGTTATTTGCCTTGTCTTTCAC
TCTCATTTCTCTCTGTTAAAATAACTTTACTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_n22.b1 MSMg01no146_n22.b1 CHROMAT_FILE:
MSMg01no146_n22.b1 PHD_FILE: MSMg01no146_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:09 2005
         (566 letters)



>mm_chr19_10918922_10919887
          Length = 966

 Score = 1019 bits (527), Expect = 0.0
 Identities = 557/567 (98%), Gaps = 2/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaccaccaccgcccagctctactagcccctgttaatagtcagccatccctatctacgcc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gcaccaccaccgcccaactctactagcccctgttaatagtcagccatccctatctacgcc 707

                                                                       
Query: 61  agggtttcagggcagttgggagtgggtaagtaggtgggatatcaatcaaagagtacaagt 120
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 706 agggtttcaggacagttgggagtgggtaaataggtgggatatcaatcaaagagtacaagt 647

                                                                       
Query: 121 taatagaagaaggaacattcctttcagtgagtgttgggaatctcctggtctcaggatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 taatagaagaaggaacattcctttcagtgagtgttgggaatctcctggtctcaggatgtt 587

                                                                       
Query: 181 caccaac-ctctataactcaaactcccagggacctggcatcttctgtagcctctcctatg 239
           ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 586 caccaacac-ctataactcaaactcccagggacctggcaccttctgtagcctctcctatg 528

                                                                       
Query: 240 catctgctcacatgtgtgcacatggactcttttgcaaagacacaaacacacataagcaat 299
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 527 catctgctcacatgtgtgcacatggactcacttgcaaagacacaaacacacataagcaat 468

                                                                       
Query: 300 acaataagtgctattaacaatcatgggaagtccttagtaaaggactctggtcacagtagg 359
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 acaataagtgctattaaaaatcatgggaagtccttagtaaaggactctggtcacagtagg 408

                                                                       
Query: 360 ggcgctggattgtggatgccagccagaagacacctcatttaaaactgtgagtgcttttga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggcgctggattgtggatgccagccagaagacacctcatttaaaactgtgagtgcttttga 348

                                                                       
Query: 420 ggagggcagagtaaatgagagagaagtacagagcgcccagtagcctgaacacactgccac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggagggcagagtaaatgagagagaagtacagagcgcccagtagcctgaacacactgccac 288

                                                                       
Query: 480 tgtcacctgtccccccttctatggacacctcatctttcccatggctgtctatttgtgttt 539
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cgtcacctgtccccccttctatggacacctcatctttcccatggctgtctatttgtgttt 228

                                      
Query: 540 ctgcattccacctgtgattattcacac 566
           |||||||||||||||||||||||||||
Sbjct: 227 ctgcattccacctgtgattattcacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)