BAC Information

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BAC

Clone NameMSMg01-147A18
Chromosome19 (Build37)
Map Location 59,877,727 - 59,878,224
singlet/doubletsinglet
Overlap genenone
Upstream geneHspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
Downstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147A18.T7 (MSMg01no147_a18.b1)MSMg01-147A18.TJ (MSMg01no147_a18.g1)
ACCAG350423AG350424
length712709
length of high quality
(start - end)
502 (44 - 545)330 (65 - 394)
definitionCHROMAT_FILE: MSMg01no147_a18.b1 PHD_FILE: MSMg01no147_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:31 2005CHROMAT_FILE: MSMg01no147_a18.g1 PHD_FILE: MSMg01no147_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTAGATGCTACAGAGAATAGACTCCAAGTCTTACTTTGCTTCTCTGG
GCTGTAGTAGCATCTAGCTTCTAGAAGGTTCTCTTTGGGTCTTATGGAAG
GACTGAGTGGATCTGTCTTTCCTCTCCTTAAGAAAGACAAGAATGAGGGT
GGATAACACCTCCCCTACAGACTCCAGTGATGAGATGCTTCAGGACTACA
GGAATCAGTAATAATCAGAAGTAATGCTACAGACTATAGGAATTATGTCA
ACAAGTTGATACATCTTTATCATCTTCTCTTACATAATCAGTCAAAGGCT
TTATGAAACATGAAGGTAGAAAGGGTATTACTGGAGGTAGCAGGGCATAA
GAGAGTGAGCATATGGAGGAGAGGAATGGGTAGTAGAGACAGTCAAACAA
AACATGTGTATGAAAATGAAAAAGGAACTTTGTTACTTTGTATGTTAATT
TATGATATATAGAGACATTTACAGATGACAATAGTTAAAGAAATACAAGA
AAGATTACCTTGCTCTGTTTCCACTCAGACACAATGACCGCGCGAGTAAG
ATAGAGGGCTTGGACAGGACAAGACACTCATTCATTCAAATTTACTTCCT
GAGCCCCGCAACTGTGGGAAGTCTTTTGCTTAACATTGGCTCCCAGGTTA
AAACCCTAGCCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAGTCTGTGTTGTGG
GAACACTTCATTACCATGACCCGCACTTCTCGTTCCGGAATGAAGAATCT
TCCTTGCGCCGGTGATGGTTAACTCCCGCCCCGAGTTTTCTTGTCCCGGG
TTTTTTCGTCCCGGGTTCTTTCTTCCCGCGTTTCGGCACCAACTCTTACC
CGCGTTCTCACGACCGGCCAGGAAAGACGCAACAAACCAGAATCTTCTGC
GGCAAAACTTTATTGCTTACATCTTCAGGAGCCAGAGAGCAAGAGAGCAA
GAGAGCAAGAGAGCAAGAGAGAGAAAGAAAAAGAACAAGAAAGCAAGAGA
CACAAAAAGCAAGAACAAGAGAGAGAAAAAGCACGAACAAGAGAGAGAAA
AAGCCCGAACCAGAGAGAGAAAAAGCAAGAACAAGAGAGAGAAAAAGAAT
GGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCAGCCTAGGACGTA
TTACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCATCACGAGAAA
GGCAGAACACATGGCGGGAAAACTGCCCCTGCACGTGTGCAGATTATGTT
TACCACTTAGAACACAGCTGTCAGCGCCATCTTATAATGGCAAATGTGAG
GGCGGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_a18.b1 MSMg01no147_a18.b1 CHROMAT_FILE:
MSMg01no147_a18.b1 PHD_FILE: MSMg01no147_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:31 2005
         (502 letters)



>mm_chr19_59877523_59878424
          Length = 902

 Score =  934 bits (483), Expect = 0.0
 Identities = 495/499 (99%), Gaps = 2/499 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagatgctac-agagaatagactccaagtcttactttgcttctctgggctgta 63
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gaattcttagaagctacaagagaatagactccaagtcttactttgcttctctgggctgta 643

                                                                       
Query: 64  gtagcatctagcttctagaaggttctctttgggtcttatggaaggactgagtggatctgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gtagcatctagcttctagaaggttctctttgggtcttatggaaggactgagtggatctgt 583

                                                                       
Query: 124 ctttcctctccttaagaaagacaagaatgagggtggataacacctcccctacagactcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ctttcctctccttaagaaagacaagaatgagggtggataacacctcccctacagactcca 523

                                                                       
Query: 184 gtgatgagatgcttcaggactacaggaatcagtaataatcagaagtaatgctacagacta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtgatgagatgcttcaggactacaggaatcagtaataatcagaagtaatgctacagacta 463

                                                                       
Query: 244 taggaattatgtcaacaagttgatacatctttatcatcttctcttacataatcagtcaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 taggaattatgtcaacaagttgatacatctttatcatcttctcttacataatcagtcaaa 403

                                                                       
Query: 304 ggctttatgaaacatgaaggtagaaagggtattactggaggtagcagggcataagagagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggctttatgaaacatgaaggtagaaagggtattactggaggtagcagggcataagagagt 343

                                                                       
Query: 364 gagcatatggaggagaggaatgggtagtagagacagtcaaacaaaacatgtgtatgaaaa 423
           ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 342 gaggatatggaggagaggaatgggtagtagagacagtcaaacaaaaca-gtgtatgaaaa 284

                                                                       
Query: 424 tgaaaaaggaactttgttactttgtatgttaatttatgatatatagagacatttacagat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgaaaaaggaactttgttactttgtatgttaatttatgatatatagagacatttacagat 224

                              
Query: 484 gacaatagttaaagaaata 502
           |||||||||||||||||||
Sbjct: 223 gacaatagttaaagaaata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)