BAC Information

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BAC

Clone NameMSMg01-147M17
Chromosome19 (Build37)
Map Location 13,154,785 - 13,155,274
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1
Downstream geneOlfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147M17.T7 (MSMg01no147_m17.b1)MSMg01-147M17.TJ (MSMg01no147_m17.g1)
ACCAG350979AG350980
length705697
length of high quality
(start - end)
490 (80 - 569)532 (71 - 602)
definitionCHROMAT_FILE: MSMg01no147_m17.b1 PHD_FILE: MSMg01no147_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:29 2005CHROMAT_FILE: MSMg01no147_m17.g1 PHD_FILE: MSMg01no147_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTNNTTAATCTATAATTTGGGCGCTAAACGACTACTATATTCAGAACA
CCGCGGAATTCCACAGACTTCTTCGAGATTGGAAATTTGATCCATGCTCC
TGTTCTTTCTGCAAGTTTTCTTTGCATTAGAGAAGGCAGAGCTCCTGTAA
TACAATTTTGACAAAACACTATAGTGGATTTTCTGACGTCAATATTTTCA
ATATTGCATGTTTCTTGGATTCCCTTAAAATGCTTTGTTTCTACATTATG
TGTGGACTTAATTGAGAATAGAAATTCATACAAATCCATAGGTGGCATGT
ATCTGATATGCATTATATGAAAACTAAATGAGATGTTCAAAACTATTTTT
TATAAGCACTGAGATGAGAGTGATCCATGAATGTTATCATTTATATTGTG
AGGACTTTGTTAGTTTATCTTATAAATCATGTTCCTTCTCCCACTGAAAT
ACAGATAAATACATGCAGACTGACTTGAGGCTTTATGTTAAGCATGTCTT
TTCATCTCAGGAGAGTTAAAACAGATAAAAGTGCAAGATTTGGCATGAGA
ATTTGAAACTTGTGAATAAAAAGATCTGTGTTAAACACTGTTTCCACTAA
TCAGTGAGCAGCCTACATCACAATACTAAGAATAGATTGTATTATGGTAT
GGCTTCCTTTTAATTTTATTTTTATTGGCATTTTAATTAATCCCTTATAT
CCCCC
ATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAC
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAATTGGACATTGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTACAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTATACAATGGAGTACTACTCAGCTATCAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA
TTAGCCCAAAACCTAGGATACCCCAGATATAAGATTACATTTCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_m17.b1 MSMg01no147_m17.b1 CHROMAT_FILE:
MSMg01no147_m17.b1 PHD_FILE: MSMg01no147_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:29 2005
         (490 letters)



>mm_chr19_13154585_13155474
          Length = 890

 Score =  932 bits (482), Expect = 0.0
 Identities = 488/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaaatttgatccatgctcctgttctttctgcaagttttctttgcattagagaaggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tggaaatttgatccatgctcctgttctttctgcaagttttctttgcattagagaaggcag 631

                                                                       
Query: 61  agctcctgtaatacaattttgacaaaacactatagtggattttctgacgtcaatattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agctcctgtaatacaattttgacaaaacactatagtggattttctgacgtcaatattttc 571

                                                                       
Query: 121 aatattgcatgtttcttggattcccttaaaatgctttgtttctacattatgtgtggactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aatattgcatgtttcttggattcccttaaaatgctttgtttctacattatgtgtggactt 511

                                                                       
Query: 181 aattgagaatagaaattcatacaaatccataggtggcatgtatctgatatgcattatatg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aattgaaaatagaaattcatacaaatccataggtggcatgtatctgatatgcattatatg 451

                                                                       
Query: 241 aaaactaaatgagatgttcaaaactattttttataagcactgagatgagagtgatccatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaaactaaatgagatgttcaaaactattttttataagcactgagatgagagtgatccatg 391

                                                                       
Query: 301 aatgttatcatttatattgtgaggactttgttagtttatcttataaatcatgttccttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aatgttatcatttatattgtgaggactttgttagtttatcttataaatcatgttccttct 331

                                                                       
Query: 361 cccactgaaatacagataaatacatgcagactgacttgaggctttatgttaagcatgtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cccactgaaatacagataaatacatgcagactgacttgaggctttatgttaagcatgtct 271

                                                                       
Query: 421 tttcatctcaggagagttaaaacagataaaagtgcaagatttggcatgagaatttgaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 270 tttcatctcaggagagttaaaacagataaaagtgcaagatttggcatgagaatttaaaac 211

                     
Query: 481 ttgtgaataa 490
           ||||||||||
Sbjct: 210 ttgtgaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)