BAC Information

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BAC

Clone NameMSMg01-148N08
Chromosome19 (Build37)
Map Location 14,250,853 - 14,251,346
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
Downstream geneEG667433, Tle4, EG433225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148N08.T7 (MSMg01no148_n08.b1)MSMg01-148N08.TJ (MSMg01no148_n08.g1)
ACCAG351719AG351720
length701697
length of high quality
(start - end)
249 (72 - 320)494 (79 - 572)
definitionCHROMAT_FILE: MSMg01no148_n08.b1 PHD_FILE: MSMg01no148_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:51 2005CHROMAT_FILE: MSMg01no148_n08.g1 PHD_FILE: MSMg01no148_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATAATTTGCGGCGCTAAACGACTCCTANATGCCCGAGCGCCGCGGA
ATTCTTTGTNTATTTCTGTACCCCATTTTTAATAGGATTATTTGATTTTT
TAGAGTCCATCTTCTTGAGTTCTTTGTATATATTGGATATTAGTCCCCTA
TCTGATTTAGGATTGGTAAAGATCCTTTCTCACTCTGTTGGTGGCCATTT
TGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGAAATTTTATGA
GGTCCCATTTGTTGATTCTTTTTTTTTTTTTTTTTTTCTTTTTAGACAGG
GTTTTTCTGTGTAGCCCTGGTTGTTTTGGAACTCACTTTGTAGACCAGGC
TGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCCAGTGCTCGGAT
TAAAGGCGTGTGCCACCACCCCCCACATCCATTTGTCAATCCTTGATCTT
ACAGCACAAGCCATTGCTGCTCTGTTCAGAAATTTTTTCCCCTGTGCTCA
TATCTTCTAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGACTCT
GGTTTTCTGTGTAGAGCCTTGACACTCTTACACTTGATTTTTGTCTTGAG
GAGATTAAGAATGGATTTATTTGCCTTCTTCCACATGACCACTGCCAGTT
GTGCCAGCCTCATTTTGTTGAAAAGCTGTTTTTTTTCCCCCGTATGTTTT
C
CCGATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCGGACTGTGTTTGACCCCA
GTGCCCTGAAGACCAGACAATGGAGCAGGTAGAGGAAATGAAATTCGTGT
TCATGGCCTGTGTCCTTCCTTATGAAGGACAGGGAGAATGAAAGAAGAAG
GTCAGTAGGAAAATGGAAAGGAGAGCAAGGCTAGTCAGAGCAGAGCAAAC
GAGTGGCGGAGAGCAGTTGTCCATCTTACTGACACTCATTCCTGTTCTGC
AGAGACTTAAAATGCCATAACACTATTGTTTTAAGGAGATGGAGATAAAC
TGTGCTTTAAAAATGTATTTTCACATATATTTAAGACATATTTCTCAGTA
TGTATTTGGAATATACCCCACACTAATTGTGTATATAGTGAACATATGTA
TTTATGATAAAGGTTTGTATAGTCATAATTAAAGTACACGTGTTACTTTA
TATTTATAAACATGGTAAATGTACAATGTCAGTGATGTTTTTTATAAACA
GAATGATAGGCCATTCTGTTCAAGGGTGTGTTTGTGGCAATTAAGTGTGA
ATGTGTGTGCGTGAGCTGCCCAATCCTCCCCCCCTATTTACCCCCTCACA
CCTCTCCCCCTTCTCCATCTCCCCCTCCCTACTAATTCCTCTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_n08.g1 MSMg01no148_n08.g1 CHROMAT_FILE:
MSMg01no148_n08.g1 PHD_FILE: MSMg01no148_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:51 2005
         (494 letters)



>mm_chr19_14250653_14251546
          Length = 894

 Score =  893 bits (462), Expect = 0.0
 Identities = 486/494 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcggactgtgtttgaccccagtgccctgaagaccagacaatggagcaggtagaggaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 694 aagcggactgtgtttgaccccagtgccctgaagaccagacaatggaacaggtagaggaaa 635

                                                                       
Query: 61  tgaaattcgtgttcatggcctgtgtccttccttatgaaggacagggagaatgaaagaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgaaattcgtgttcatggcctgtgtccttccttatgaaggacagggagaatgaaagaaga 575

                                                                       
Query: 121 aggtcagtaggaaaatggaaaggagagcaaggctagtcagagcagagcaaacgagtggcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 574 aggtcagtaggaaaatggaaaggagagcaaggctagtcagagcagagcaaatgagtggcg 515

                                                                       
Query: 181 gagagcagttgtccatcttactgacactcattcctgttctgcagagacttaaaatgccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gagagcagttgtccatcttactgacactcattcctgttctgcagagacttaaaatgccat 455

                                                                       
Query: 241 aacactattgttttaaggagatggagataaactgtgctttaaaaatgtattttcacatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aacactattgttttaaggagatggagataaactgtgctttaaaaatgtattttcacatat 395

                                                                       
Query: 301 atttaagacatatttctcagtatgtatttggaatataccccacactaattgtgtatatag 360
           ||||||||||||||||||||||||||||||||||||||   | |||||||||||||||||
Sbjct: 394 atttaagacatatttctcagtatgtatttggaatatacattatactaattgtgtatatag 335

                                                                       
Query: 361 tgaacatatgtatttatgataaaggtttgtatagtcataattaaagtacacgtgttactt 420
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 334 tgaacatatgtatttatgataaaagtttgtatagtcataattaaagtacaagtgttactt 275

                                                                       
Query: 421 tatatttataaacatggtaaatgtacaatgtcagtgatgttttttataaacagaatgata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tatatttataaacatggtaaatgtacaatgtcagtgatgttttttataaacagaatgata 215

                         
Query: 481 ggccattctgttca 494
           ||||||||||||||
Sbjct: 214 ggccattctgttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)