Query= MSMg01no150_c16.b1 MSMg01no150_c16.b1 CHROMAT_FILE:
MSMg01no150_c16.b1 PHD_FILE: MSMg01no150_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:39 2005
(498 letters)
>mm_chr19_14957518_14958413
Length = 896
Score = 866 bits (448), Expect = 0.0
Identities = 485/506 (95%), Gaps = 18/506 (3%)
Strand = Plus / Minus
Query: 1 aaaccaaatttctacatgatgctgtctttctataagtgtctcgagttcaataataaacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aaaccaaatttctacatgatgctgtctttctataagtgtctcgagttcaataataaacta 530
Query: 61 tgaaaggatgccttggattctggtggcattctggatttgttgagggtataccacctttca 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 529 tgaaaggatgccttggattctggtggctttctggatttgttgagggtataccacctttca 470
Query: 121 tcagaaccaagtttccaggcttcagatactccttgtcttatgttattgcctttcttctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcagaaccaagtttccaggcttcagatactccttgtcttatgttattgcctttcttctcc 410
Query: 181 cagaaatcatggccactgtttgcttttgaattttccttggtctatagcagcatacacgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cagaaatcatggccactgtttgcttttgaattttccttggtctatagcagcatacacgag 350
Query: 241 gcc----tttatttcctatcctaactcaggggtgagatctctcactggcctcaaatacag 296
||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gccagaa---a--tcctatcctaactcaggggtgagatctctcactggcctcaaatacag 295
Query: 297 tgagatcctgtattattgcatcatatccatcctcaaacctca----cccccacataaacc 352
|||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 294 tgagatcctgtattattgcatcatatccatcctcaaacctcagagg-----agataaacc 240
Query: 353 aattatctcctttctttgtttaaatttatacttacgttgttgttgttgttttgttttgtt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aattatctcctttctttgtttaaatttatacttacgttgttgttgttgttttgttttgtt 180
Query: 413 ttgcttttgtccagagtctcaaactgtactccaggcctagaagcaccatacaattggggc 472
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ttgtttttgtccagagtctcaaactgtactccaggcctagaagcaccatacaattggggc 120
Query: 473 tagacataaagtcatagcaatccacc 498
||||||||||||||||||||||||||
Sbjct: 119 tagacataaagtcatagcaatccacc 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 896
Length adjustment: 10
Effective length of query: 488
Effective length of database: 886
Effective search space: 432368
Effective search space used: 432368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_c16.g1 MSMg01no150_c16.g1 CHROMAT_FILE:
MSMg01no150_c16.g1 PHD_FILE: MSMg01no150_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:39 2005
(419 letters)
>mm_chr19_14772664_14773482
Length = 819
Score = 756 bits (391), Expect = 0.0
Identities = 412/419 (98%)
Strand = Plus / Plus
Query: 1 actctgtagaccaggctggcctcgaactcagaaattcgtctgcctctgcctcctgagtgc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 actctgtagaccaggctggcctcgaactcagaaattcgtctgcttctgcctcctgagtgc 260
Query: 61 tgggattaaaggtgtgcgccaccacacctggctaaattcttgacaattgaaaatttcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggtgtgcgccaccacacctggctaaattcttgacaattgaaaatttcaaa 320
Query: 121 aggaaaaggaacaataaaagaattgggcaccaagacagacagctcatcagtaggaagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaaaggaacaataaaagaattgggcaccaagacagacagctcatcagtaggaagtgg 380
Query: 181 atccagcttacaacaagaccacagagatgttttcattgcacggaactgtgggagacacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccagcttacaacaagaccacagagatgttttcattgcacggaactgtgggagacacca 440
Query: 241 ttccttaccagtgttctgcatctttctggaagagggctattcagcaatgggggaagaaca 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ttccttaccagtgttctgcatctttctggaagagggcgattcagcaatgggggaagaaca 500
Query: 301 agacataagtgaattggattaactgagaagtaggaaaaaccctcccccccaccctgatag 360
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 501 agacataagtgaattggattaactgagaagtaggaaaaacccttctcaagaccctgatag 560
Query: 361 gaagagaatgatcatatgtggcatctaaagcaggtcttgctgaggcattcaaacaagca 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagagaatgatcatatgtggcatctaaagcaggtcttgctgaggcattcaaacaagca 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
