BAC Information

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BAC

Clone NameMSMg01-150I07
Chromosome19 (Build37)
Map Location 33,725,179 - 33,725,602
singlet/doubletsinglet
Overlap genenone
Upstream genePapss2, Atad1, Pten, B430203M17Rik, 6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106
Downstream geneEG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150I07.T7 (MSMg01no150_i07.b1)MSMg01-150I07.TJ (MSMg01no150_i07.g1)
ACCAG352934AG352935
length727724
length of high quality
(start - end)
428 (41 - 468)446 (77 - 522)
definitionCHROMAT_FILE: MSMg01no150_i07.b1 PHD_FILE: MSMg01no150_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:06 2005CHROMAT_FILE: MSMg01no150_i07.g1 PHD_FILE: MSMg01no150_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAAATAAATTCCTTCCAAAATTAAAATGGCATTTCACTGGTGAAATGAA
AAGCAATTAAGCTAGTATTTTAAATGTCCTCATAGAATACTTTTCTCTCT
GTTATAGTGTGAAGTTTCCATCATAGAACTTGACTACTATTAATGATCCT
GAACATTTTTTTTCACACAGCTAGTAGCAAAATTGTATGGATTATGCTTT
ATGTTTGCTCATAATATTATCAATAACTGGAAAAAGGAACACAACATTAA
GGGAAAAACTCCTTAAAACTAAACAGAAGTTGGTAAAGAATGAAGATGGT
CTCATAACTGCCTTTCAGTTAATTTTGTGTAATACCCATTCCTATAGTAA
TGTCGATGTATAACCCCCCACTTTTACATTATAAATTGTGTATAGTACCA
TTCTTCAACTATAATGACTGAGTAAATATATAAACACAAAAGATGTTTGA
ATAACACGGTTCATATTACATACACACAATTTCATGATTGCACCTATTTC
TAACTTCCAAAATAAACAACTTTTTAATTTGCCATGGTTCCTCCTATTTT
CCCTAAGAATATAGGGATTTAACACCACACTTTATCATTTTTTGGCCCCT
TATTATTTTCTGCCCCCCCTTTCTTGCCTTCATAATGATCGCCCATCTAC
CTGACTTCTCAGCACAACGTTTTATAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTGTACTGAGGCATATAAAGTT
TGCACAACCAATGGGCCTCTCTTTCCACTGATGGCCAATTAAGGCTATCA
TCTGATACATATGCAGCTAGAGACAAGAGCTCTGGGGGTACTGGTTAGTT
CTTATTGTTGTTCCACCTATAGGGTTGCAGATGCCCCCAGCTTCCTGGGT
ACTTCCTCCAGCTCCTTCATTGGGGGCCCAGTGATCCATTCAATAGCTGA
CTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCGGGCATAGTCTCACAAG
AGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAAT
GGGGTCAGAGTTTGCACCCTGATTATGGGATGGATTCCCAGGTATGGCAG
TCTCTAGATGGTCCATCTTTTCGTCTCAGCTCCAAACTCTTGTCTCTGTA
GCTCCTTCCATGGGTGCCTTGCTCCCAATTCAAAGAAAGGGCAAAGTATC
CACACTTTGGTCTTTGTTCTTCTCGAGCTTCATGCGTTTTGCAAATTGTA
TCTTATATCTTGCGTACTCTAAGTTTCCGGGCTGATATCCCCTTACCCCC
CGAGTATATATCCCGACCTTTGATCCGAGCCCTGCCTTAGCTCCTTCTCT
CTTGAGTCGCCCACCCCCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_i07.b1 MSMg01no150_i07.b1 CHROMAT_FILE:
MSMg01no150_i07.b1 PHD_FILE: MSMg01no150_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:06 2005
         (428 letters)



>mm_chr19_33724975_33725802
          Length = 828

 Score =  754 bits (390), Expect = 0.0
 Identities = 416/430 (96%), Gaps = 12/430 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaaataaa-ttccttccaaaattaaaatggcatttcactggtgaaatgaaaag 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaattccaaaataaagtt-cttccaaaattaaaatggcatttcactggtgaaatgaaaag 570

                                                                       
Query: 64  caattaagctagtattttaaatgtcctcatagaatacttttctctctgttatagtgtgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 caattaagctagtattttaaatgtcctcatagaatacttttctctctgttatagtgtgaa 510

                                                                       
Query: 124 gtttccatcatagaacttgactactattaatgatcctgaacattttttttcacacagcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtttccatcatagaacttgactactattaatgatcctgaacattttttttcacacagcta 450

                                                                       
Query: 184 gtagcaaaattgtatggattatgctttatgtttgctcataatattatcaataactggaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtagcaaaattgtatggattatgctttatgtttgctcataatattatcaataactggaaa 390

                                                                       
Query: 244 aaggaacacaacattaagggaaaaactccttaaaactaaacagaagttggtaaagaatga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaggaacacaacattaagggaaaaactccttaaaactaaacagaagttggtaaagaatga 330

                                                                       
Query: 304 agatggtctcataactgcctttcagttaattttgtgtaatacccattcctatagtaatgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agatggtctcataactgcctttcagttaattttgtgtaatacccattcctatagtaatgt 270

                                                                       
Query: 364 cgatgtataa-----ccccccacttttacattataaattgtgtatagtaccattcttcaa 418
           ||||||||||          |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 269 cgatgtataattttt-----cacttttatattataaactgtgtatagtaccattcttcaa 215

                     
Query: 419 ctataatgac 428
           ||||||||||
Sbjct: 214 ctataatgac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)