Query= MSMg01no150_n16.b1 MSMg01no150_n16.b1 CHROMAT_FILE:
MSMg01no150_n16.b1 PHD_FILE: MSMg01no150_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:31 2005
(606 letters)
>mm_chr19_35264386_35265391
Length = 1006
Score = 1096 bits (567), Expect = 0.0
Identities = 594/603 (98%)
Strand = Plus / Minus
Query: 4 ggaattcttttgtgttctccaagtacagtgtgtcaaaggatgctctgacaaattgaactt 63
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 806 ggaattcttttgtgttctgtaagtacagtgcgtcaaaggatgctctgacaaattgaactt 747
Query: 64 tgcagggagactaaagggaagcaaaggaagctgctaaccactgaaagtaatgcactttct 123
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 746 tgcagggaggctaaagggaagcaaagaaagctgctaaccactgaaagtaatgcactttct 687
Query: 124 taatgacttagcaggggctgggcccatcttagtagtcttctcctgccttcagctgcaaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 taatgacttagcaggggctgggcccatcttagtagtcttctcctgccttcagctgcaaac 627
Query: 184 agacaatggagctcactctgggaaacacataattggtctttatcttctaggatgagccag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agacaatggagctcactctgggaaacacataattggtctttatcttctaggatgagccag 567
Query: 244 tttaccatagacttgcttaatttttgtcaatataaaatcctgcaacctaaaatttcagag 303
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tttaccatagacttacttaatttttgtcaatataaaatcctgcaacctaaaatttcagag 507
Query: 304 catttttctttctcttcttttttaaaatgaactctactggaagtgtctcaggtttattcc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 catttttctttctcttcttttttaaaatgaactctactggaagtgtctcaggtttattcc 447
Query: 364 atgtaaacttgacatatacatgtcctaaggaaggagcaatccctagcagtagcttcatcc 423
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atgtaaacttgatatatacatgtcctaaggaaggagcaatccctagcagtagcttcatcc 387
Query: 424 catgactcccctgcaaggaaacaccccatggcttccattcatttgataccatttagcaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catgactcccctgcaaggaaacaccccatggcttccattcatttgataccatttagcaat 327
Query: 484 tcaatccatacctcgttctctgcctatatgttgggtatacatacagtaaaggaacaatac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcaatccatacctcgttctctgcctatatgttgggtatacatacagtaaaggaacaatac 267
Query: 544 aagataatgtggatatatcatttttctccttctgtagtccatctactggcaggagaaaga 603
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 266 aagataatgtgggtatatcatttttctccttctatagtccatctactggcaggagaaaga 207
Query: 604 gca 606
|||
Sbjct: 206 gca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_n16.g1 MSMg01no150_n16.g1 CHROMAT_FILE:
MSMg01no150_n16.g1 PHD_FILE: MSMg01no150_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:31 2005
(480 letters)
>mm_chr19_35175695_35176571
Length = 877
Score = 828 bits (428), Expect = 0.0
Identities = 466/480 (97%), Gaps = 3/480 (0%)
Strand = Plus / Plus
Query: 1 aggttctccaaagttctttgctatttttaaatgttctcattgtaatgcgaagcaggtccc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aggttctccaaagttctttgctatttttaaatgttctcattgtaatgcaaagcaggtccc 260
Query: 61 aatcatgcaatggttgagttggtatggtaattgcattataggaactagccaaggtgctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcatgcaatggttgagttggtatggtaattgcattataggaactagccaaggtgctaa 320
Query: 121 gcccacaaaactgacctaagacccattgttctctttgtagcagggttgtctttaacagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccacaaaactgacctaagacccattgttctctttgtagcagggttgtctttaacagtg 380
Query: 181 acagatttaaagggacaacactctttgggacattccccccttccccaggtacaaatgagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagatttaaagggacaacactctttgggacattccccccttccccaggtacaaatgagt 440
Query: 241 gaaaacttagtttataggtcctgtagcgggtgtgactaatttcatatctttgataaaatg 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 gaaaacttagtttataggtcctgtagcgggtgtgactaattttatatctttgataaaatg 500
Query: 301 aggaccattgttatccaaagaaagctaggctgatgcaagttaggtacaaatcctataggg 360
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 501 aggaccattgttatccaaagaaagctaggctgatgcaagttaggtagaaatcatatagag 560
Query: 361 gacacatggaaaaatagatcagcacttttggttttctaagcaatgaataaagttatattg 420
|||| |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct: 561 gacaaatggaaaaatagatcagcacatttggttttctatgcaatgaacaaagttatattg 620
Query: 421 atgttataggaaaaaaaaaagaacttaaatttgagcttaagttaattaattgatttattt 480
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 atgttatag---aaaaaaaacaacttaaatttgaggttaagttaattaattgatttattt 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 877
Length adjustment: 10
Effective length of query: 470
Effective length of database: 867
Effective search space: 407490
Effective search space used: 407490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
