BAC Information

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BAC

Clone NameMSMg01-151A16
Chromosome19 (Build37)
Map Location 22,511,126 - 22,511,490
singlet/doubletsinglet
Overlap geneTrpm3
Upstream geneGda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneEG433230, Klf9, Smc5, Mamdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151A16.T7 (MSMg01no151_a16.b1)MSMg01-151A16.TJ (MSMg01no151_a16.g1)
ACCAG353314AG353315
length731735
length of high quality
(start - end)
371 (45 - 415)---
definitionCHROMAT_FILE: MSMg01no151_a16.b1 PHD_FILE: MSMg01no151_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:45 2005CHROMAT_FILE: MSMg01no151_a16.g1 PHD_FILE: MSMg01no151_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCAGCACTGCTTTGTCTCTGTTCAGGTTCAACATCTCAAACGCTG
GTTTCTTCACGGAAAGTCAGAAGAGCTCTTCTTCATCCTTGCCTTTTAAA
ATGGCCACCAGTATCTTATAATAGGTAAACCCATAGATTATAGAATCAGA
TGGGCCTAGATTTAAGTCTACCTTGCCTCAGGTGACCTCCTGAAGGAATA
TCAACTTGAGAGAGGGCTTCTTTGTTAGTCATAGTGAGAGAATGTTACAA
ACTTTCTGAGTGTATTAAGAGGCATAAGCTGAGTGAGCTCTTGGTACATA
ATACTCTTTGTGGTTAGCACTCAGCAATTGGTCGATCATTTTTGCCTTTA
TCACAATCAGCTCCCCCCCGCCTTAACAATTAAGACTTACAAAAAATTAT
ATTAATTGCCAAATAGCTTAATAGGGTTTCAAGTCCAGTTTACCCTGGTT
TCAAGTTGCATTGATTTTAATCCCCCTTCAAAAAAAAATCCCAAAATATA
AAATTGGCCAACCCACTAAAATCATCTAATTCCTGACCCTGCTATGAATA
AGGCTCATCGTTGTTGGAAATAAGATAACAGACCGAGCTCAGGGACCCAT
TCTCTCCAAGAATGACCACAATACATAGTCAGTACTAGATGTATCACTTC
CCCTAGCTTTCATCATGAATTCCCCCCCCGG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATTGACTGCGTGAAGTACTGCTGATGACTACAGTATCCACAGAT
GCTGGAGGTAACACCTTATCCTTCGATCCATAGGACAGCCTCAGAGGTGA
TATGTGCTAATGCTACCCGAGTATGACGCTACTTGATACATAACTCAAGT
ATCCTAGAAAAATGATTACTTTCTCCAACATACGCAGACGCGTGAAAGAG
AGAGAGAGAGTGATAGAGATTTGCAGTCCTTCCTATTTGAGATGTGGCCA
CCTCGCGTAGATGACCTGACCTGGTCGCTGATGAATCTAGAATTCTTTTC
TACTTCTAAGGCTGGAACTGCTGTAAAACATGAGCATGCCTTGCCGGGCT
CGTCCCCCCCCACTGTATCGTTACACACTAGTGCTTCGCCACACTTATCC
ACCCTTGGTCGAGGGCCATACACCCTCTTCCATGGTTTAACAGCCGGCCA
ACTTGCGCTTACCCCCTATACACGGCCGCTGCACCAACCGGTACTTAAAG
GACCTTGCGCGCCTTGTTTCCCCCCCTTTACTCCGCCCACCCCGCGGGCA
ATTATCCCCTCCCTCTCCGTTCACCCCCTCTTCCTTCTCCTCCGCTGCCC
CCTTTTGGGTGGGCCCACTCGGGACTATTACTTTATCGCCGCATTATTGT
CTTCTTGGGCCGTATATCCTCCTATGAACATGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_a16.b1 MSMg01no151_a16.b1 CHROMAT_FILE:
MSMg01no151_a16.b1 PHD_FILE: MSMg01no151_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:45 2005
         (371 letters)



>mm_chr19_22510922_22511692
          Length = 771

 Score =  675 bits (349), Expect = 0.0
 Identities = 361/365 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccagcactgctttgtctctgttcaggttcaacatctcaaacgctggtttcttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccagcactgctttgtctctgttcaggttcaacatctcaaacgctggtttcttc 264

                                                                       
Query: 65  acggaaagtcagaagagctcttcttcatccttgccttttaaaatggccaccagtatctta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 acggaaagtcagaagagctcttcttcatccttgccttttaaaatggccaccagtatcttg 324

                                                                       
Query: 125 taataggtaaacccatagattatagaatcagatgggcctagatttaagtctaccttgcct 184
           ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taataggtaaaactatagatgatagaatcagatgggcctagatttaagtctaccttgcct 384

                                                                       
Query: 185 caggtgacctcctgaaggaatatcaacttgagagagggcttctttgttagtcatagtgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggtgacctcctgaaggaatatcaacttgagagagggcttctttgttagtcatagtgag 444

                                                                       
Query: 245 agaatgttacaaactttctgagtgtattaagaggcataagctgagtgagctcttggtaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaatgttacaaactttctgagtgtattaagaggcataagctgagtgagctcttggtaca 504

                                                                       
Query: 305 taatactctttgtggttagcactcagcaattggtcgatcatttttgcctttatcacaatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taatactctttgtggttagcactcagcaattggtcgatcatttttgcctttatcacaatc 564

                
Query: 365 agctc 369
           |||||
Sbjct: 565 agctc 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)