BAC Information

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BAC

Clone NameMSMg01-151G15
Chromosome19 (Build37)
Map Location 42,868,845 - 42,869,086
singlet/doubletsinglet
Overlap geneLOC545291
Upstream geneArhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1
Downstream geneEG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151G15.T7 (MSMg01no151_g15.b1)MSMg01-151G15.TJ (MSMg01no151_g15.g1)
ACCAG353587AG353588
length776731
length of high quality
(start - end)
49 (183 - 231)242 (78 - 319)
definitionCHROMAT_FILE: MSMg01no151_g15.b1 PHD_FILE: MSMg01no151_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:12 2005CHROMAT_FILE: MSMg01no151_g15.g1 PHD_FILE: MSMg01no151_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACATCCTCACCGTCTGNGGNAA
TNTCTTGGTTGCCACACCAAATCCTGAAAACTCAGATGAAAAGTGGCAGA
GAGATCACCAAGTACCCTGCTGCTGTGGCTGCGGCTGTGGCTGCTGCAGG
AGATCACAGCAATGATGTGCCTGCCACTCATCTCCCGAGCCTCACTCACA
GTGCATCTGGAACTTATCCACAACCTAACATTTTAATAGCCACTCGAATA
TCGTTGTGACTTGCATAGTGTCTCTGTTCACCCCTTCAGACCAGAACGGG
CTGGACCCCAGAGTTTCTATTTTTGCCCAAAGATACCAGCGAAGGCTCCT
TACCTATTTTTTCCCCCCATCTCCCCCGTGTTAACCCTTGCTCGTGACAT
TGATCTGTCCCCCCCCCCCACAAAGAAAAAATGAATCCTACCCTTACCCT
ACCTTCTCCATCCCCCCTTCCCCCCCCCACTGTCCCACCATTCCCCTTTA
CTTCCGCCCTATCTCCCCCTTTCCCCCCCGTACCTCCCCTCCCCCTTCCC
TTTACCCCCACTCCCTCCTTTTTCTTCCCCCCTTCCCTTTTTGATTCCCC
CCCCCCTTTCCCCCCCCTCCGCTTTTAATCCCCCACCTCCCCATCCCTGT
ACCCTTTCCCCTTCCCCCCCTATCCCTTCACCTTCTTCCCCTTTTCCCCC
CTTTTTTCCCCCCCCCTTTCCCCTCCATATTCCTTTCCCTTCTTTACCCC
CCCCACCCTTTACCTTCCCTCCCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGTTAAGAACAGGTTCTGTTC
TTGCAGAGGACCCAGTTTGATTCCCAGCACGCACGCTGAGTAGTTTCCAA
TCTCCTGTAGCCCTGGCTCCAGGGACTCCAATGCCCTCTTCTGGCCTCCA
TAGGGGCTGCATTAGTGTGTAAATATCACCCCCTCCATGCACGCAAAAAT
TGAAAATCAGTCTTTAAAGAAGACACAGCAGCATGTGGAGGAAGTTCCAG
ACAATGGAAACAGCAAAGACAGATTAGCCCTGAGATTAGAAAAACTAACC
AGAGAAATTGCAGCACAGGGCGAAGGAAGTGGTAGACAGGGACTAGAAAG
GGCAGAAGTTAGAACCACCCTCTAAGGAGCTGGAGGTGTTGATAAAAGGG
TGGGCTTCGGGGAATGCAGATAAATGTTCTAGAAGCCAGTGAACGTTTAG
ACAGGTGAATGGCACGCTCACATTTCTGTTTGTCCAGGATCATTCCAAAT
TAGATAGTGAACTTTGCCTTACGCTAGCTGCCAGGTCTGGACAGCCCGCC
TGACTAACTCGCCCCACGACACCCTCGGCCCCCCCGATACACCTGTCACT
CCCTCCCCTGTTATCACCCCACCCCCCCCGTCCCCCGCCCAACCCCACCC
CCTTCTTCCCCCTCCCCTATCTAACCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_g15.g1 MSMg01no151_g15.g1 CHROMAT_FILE:
MSMg01no151_g15.g1 PHD_FILE: MSMg01no151_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:12 2005
         (242 letters)



>mm_chr19_42868518_42869159
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagttaagaacaggttctgttcttgcagaggacccagtttgattcccagcacgcacgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gcagttaagaacaggttctgttcttgcagaggacccagtttgattcccagcacgcacgct 510

                                                                       
Query: 61  gagtagtttccaatctcctgtagccctggctccagggactccaatgccctcttctggcct 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 509 gagtagtttccaatctcctgtagccctggctccggggactccaatgccctcttctggcct 450

                                                                       
Query: 121 ccataggggctgcattagtgtgtaaatatcaccccctccatgcacgcaaaaattgaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccataggggctgcattagtgtgtaaatatcaccccctccatgcacgcaaaaattgaaaat 390

                                                                       
Query: 181 cagtctttaaagaagacacagcagcatgtggaggaagttccagacaatggaaacagcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cagtctttaaagaagacacagcagcatgtggaggaagttccagacaatggaaacagcaaa 330

             
Query: 241 ga 242
           ||
Sbjct: 329 ga 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)