BAC Information

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BAC

Clone NameMSMg01-152F03
Chromosome19 (Build37)
Map Location 21,680,418 - 21,831,900
singlet/doubletdoublet
Overlap gene1110059E24Rik, 5730446C15Rik
Upstream geneAldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633
Downstream geneTmem2, EG433229, Trpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152F03.T7 (MSMg01no152_f03.b1)MSMg01-152F03.TJ (MSMg01no152_f03.g1)
ACCAG354234AG354235
length706708
length of high quality
(start - end)
547 (55 - 601)503 (83 - 585)
definitionCHROMAT_FILE: MSMg01no152_f03.b1 PHD_FILE: MSMg01no152_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:23 2005CHROMAT_FILE: MSMg01no152_f03.g1 PHD_FILE: MSMg01no152_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,831,581 - 21,831,900)(21,680,418 - 21,680,920)
sequence
CCCCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATTAATATCCGGATTAGAGACAGACAGAATGTAAAA
GCCAGAGGGTGGGAGGAGTACTGTGAAGTGCCGTCTTCTGGATGTAACAT
GACTAAATGAATTCATAGCAGCTGTAGTGACCTGCTCAAGACCTATACAA
GATCAAGCCAGCTCAAATTATAGCATAGATGGCATAGATTCACTCAGTCC
CCACCCGTACTCAGGCACTGTTAACAGTGGATAGTTGCTAGGGGAAAGAA
GTCTCCTTCTTTTTGAGGATGGCACTGCTGGTAGGTTTCTCATGATGTAG
TGCATGGTCCATACCCATGCACATAAGGGCAGCACTAATTGCACTTAGTG
GATTTTTTTTAAGACACAAAAATGGGATGGGGGCATGTTAGAGAGCACAT
AGTGGAAGTTGGGAATGAGAAATTGAGGTTCAATATGGTCATATTTCATC
ATATATATAAGAAATTTCTAAAAACAAAGAGAAAAAAGGTTTAATAATTA
AATTATAAGGTACTTAATACTCATCAACAATCCACCAATGTAATGTGCAC
AGTTAATAAGAATTCTGGAAAACTGCTACATACAACATAATCTCTTTTAA
ACCTAGCTTCTTGGAGCTGATCTACCTGTGTCCAAAGGGGCCATACGGCT
TATAAA
CCCCCACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTTGTTTTAAATCAG
GAGTTAAAGGTTGTTGTTCTTTGCTCTATTGTGAGTTTGAGACCAGCTTG
GACTACACTGAACCTCAAAGCAAAAAAGCCTTGATCAACATAATCACATA
GTAGTGGCATTTTAAATAGCCACTATCATTTAAAGGTAGGAAGCTGAAGA
GGTGGTATTAAAAACTCTAGCAGCTGACCCCGTATGGTTAGCAAAGAACA
TATTCAGAATTGGGATCCAGACTTTTTGCTCATAATCTCTCACTCCTGGC
TCTATTTTAGTGTCAGATCGTTAAGGTTGGCCATTTATCATGTTTTGAAC
AATTCCTGTATCTTAAATAAACTAAAACAAACATTTTATAAAATGAAGAC
ACCTGCTAGAAACCATGTCTTATACGAACAATTTTTTTAAACTCTAAGAA
CCAAGAGACTAAGCTGGATTTAAAAGACAATTTACTATAATTGTTTTATT
AGGAACAATAAGTATTGTTATGATTTAAGCAGTAGACACCATAAAGTCAC
ACAATGCAACAGATAGCATTCAAGGGGTTTATTGGCGGAAGGGGGATGGC
TATGCCAAGGCTGGCTCTGATATAGAGAGAGAGAGACATATACAGAGAGA
GCATATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_f03.b1 MSMg01no152_f03.b1 CHROMAT_FILE:
MSMg01no152_f03.b1 PHD_FILE: MSMg01no152_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:23 2005
         (547 letters)



>mm_chr19_21830954_21831900
          Length = 947

 Score =  603 bits (312), Expect = e-177
 Identities = 318/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 228 tagttgctaggggaaagaagtctccttctttttgaggatggcactgctggtaggtttctc 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 tagttgctaggggaaagaagtctccttctttttgaggatggcactgctggtaggtttctc 888

                                                                       
Query: 288 atgatgtagtgcatggtccatacccatgcacataagggcagcactaattgcacttagtgg 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 atgatgtagtgcatggtccatacccatgcacataagggcagcactaattgcacttagtgg 828

                                                                       
Query: 348 attttttttaagacacaaaaatgggatgggggcatgttagagagcacatagtggaagttg 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 attttttttaagacacaaaaatgggatgggggcatgttagagagcacatagtggaagttg 768

                                                                       
Query: 408 ggaatgagaaattgaggttcaatatggtcatatttcatcatatatataagaaatttctaa 467
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ggaatgagaaattgaggttaaatatggtcatatttcatcatatatataagaaatttctaa 708

                                                                       
Query: 468 aaacaaagagaaaaaaggtttaataattaaattataaggtacttaatactcatcaacaat 527
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 707 aaacaaagagaaaaaaggtttaacaattaaattataaggtacttaatactcatcaacaat 648

                               
Query: 528 ccaccaatgtaatgtgcaca 547
           ||||||||||||||||||||
Sbjct: 647 ccaccaatgtaatgtgcaca 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no152_f03.g1 MSMg01no152_f03.g1 CHROMAT_FILE:
MSMg01no152_f03.g1 PHD_FILE: MSMg01no152_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:23 2005
         (503 letters)



>mm_chr19_21680218_21681120
          Length = 903

 Score =  973 bits (503), Expect = 0.0
 Identities = 503/503 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggttgttttaaatcaggagttaaaggttgttgttctttgctctattgtgagtttgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggttgttttaaatcaggagttaaaggttgttgttctttgctctattgtgagtttgaga 260

                                                                       
Query: 61  ccagcttggactacactgaacctcaaagcaaaaaagccttgatcaacataatcacatagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagcttggactacactgaacctcaaagcaaaaaagccttgatcaacataatcacatagt 320

                                                                       
Query: 121 agtggcattttaaatagccactatcatttaaaggtaggaagctgaagaggtggtattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggcattttaaatagccactatcatttaaaggtaggaagctgaagaggtggtattaaa 380

                                                                       
Query: 181 aactctagcagctgaccccgtatggttagcaaagaacatattcagaattgggatccagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactctagcagctgaccccgtatggttagcaaagaacatattcagaattgggatccagac 440

                                                                       
Query: 241 tttttgctcataatctctcactcctggctctattttagtgtcagatcgttaaggttggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttgctcataatctctcactcctggctctattttagtgtcagatcgttaaggttggcc 500

                                                                       
Query: 301 atttatcatgttttgaacaattcctgtatcttaaataaactaaaacaaacattttataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttatcatgttttgaacaattcctgtatcttaaataaactaaaacaaacattttataaa 560

                                                                       
Query: 361 atgaagacacctgctagaaaccatgtcttatacgaacaatttttttaaactctaagaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgaagacacctgctagaaaccatgtcttatacgaacaatttttttaaactctaagaacc 620

                                                                       
Query: 421 aagagactaagctggatttaaaagacaatttactataattgttttattaggaacaataag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagactaagctggatttaaaagacaatttactataattgttttattaggaacaataag 680

                                  
Query: 481 tattgttatgatttaagcagtag 503
           |||||||||||||||||||||||
Sbjct: 681 tattgttatgatttaagcagtag 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)