BAC Information

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BAC

Clone NameMSMg01-152I22
Chromosome19 (Build37)
Map Location 18,947,862 - 18,948,236
singlet/doubletsinglet
Overlap geneTrpm6
Upstream genePcsk5, Eef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik
Downstream geneRorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152I22.T7 (MSMg01no152_i22.b1)MSMg01-152I22.TJ (MSMg01no152_i22.g1)
ACCAG354397AG354398
length710894
length of high quality
(start - end)
376 (41 - 416)---
definitionCHROMAT_FILE: MSMg01no152_i22.b1 PHD_FILE: MSMg01no152_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:40 2005CHROMAT_FILE: MSMg01no152_i22.g1 PHD_FILE: MSMg01no152_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGACGATCCGCGGAATTCCAG
AATATTTCCTTTCCAGCATCCTTTATTTTTTCCCACTAGCAAAAACTATT
ATATATAATAGTTTTAAATATAAAGTGCACCTTAAATCAGAAGGATATCT
TAGTCTTAGAAAACTTTTATATGAGGTTATATAACATGGTCTATGAAGGG
GCTATCTCTTTTCTCTCCCAATAACAAATGAGACACTAATTCAAATAATG
TATGATTCTTTCTTATAAATGGTTTTTAATCTATGCTCCACATTCTCTAG
TTTCCTTTCTCCGATGCAAACTCAGTGCACAGTGGTCTGTGGGGACATCT
ACTGTTGGTTTTGTGGAGTTTGCCTTCTTTTTCCCAGAGAGGATGGAACA
CTAATTTTAATTAGAAGCGAGTGATCTGCATTTTCCTGCCAAGAGGCATA
GCCTAACAGATCAGAGTCTGCGCAAGTTACAGTATTCCTCGCTAGAGACT
CTCTACAGCTGGCACTTACAGTCAAAATAATAGATTACTGCTGAGCTAGA
GGAGTCAGTCCTAGGAGCCTAGACTGACGACGGCGCAATCCCCAGATCCC
TTATTCACCACAGAGGACAANTCAGAATACCACAGTTTATTATGGGACCC
TACCCAACTGACCCCTCTATAATACCACCAGCCATTCCCGTGTTGGCAAG
GTCCCTGTTC
TGGAGGGAAGGNNCGCGCCTAGANTCATTTTGCGGNANNNNANNANACCC
GNATTTGCANACACACCCCTCTCAGTNNANGTGGGGATACAATACACAGT
GTGACATAGGCTCGAATACAAATGTGTGTCGGCGGATGCCTCTAATACGT
TTTCGAAGTGTGATTAGATCTACTAGGAACATTCGCTGTTTCAACATAGA
GGCAGTTACTCGACTGAGGGAATCGAAAACAAGAGCATACCACATATAGA
AAAACAAAGGCTTATACAATAGCGTATATTGTTTATAGTGATGTATGTAC
ACGACCACGAGTATGATGAAGTGGAACATCAGAGAACAACGTAGACGGGT
GTCCATCTGGGATCGTGATATCAGTCGTTTATATGAATTGCGGGATTGGC
ACAACAATGGGAGAACATGTCTCATTTAGGCTGACCCACCGTATACAATA
TAAAAGCAGTGGGAGGTGGCGTTTAAGGTGTTTCGGGTAGAAAAAACTTA
ACATATAGATATGGGTGTGGAACGAGGTAACACCGCTTCGGGCAGAAACA
ATCCGCGGGCTACACACTAACAGATCGGCAGTGGGGAATAACAATGAGTC
GGTTTACCTCCGTTCCTCTCTCACAAGGTATACCCACACACGCCGGAGAA
CAACAACAACTCGAGGACCAACAAACATGTGGCACAACAACGGGGACAAC
ACGCGGAACTCCGCAAACACCTTCAAAACGGGGGGGCTAAAAAACGGGAC
ACGAAAGGGTGGCACATNTCGAGAACCACAAGACCATTGCAGAACCCTTC
GTTACTTGTTGTGTGAACACAGAGGTAATGAACCCGAAACCAGTGGGNAA
CACTCGCCCCATCATGACGACAAGGGGGCAACACACTTGCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_i22.b1 MSMg01no152_i22.b1 CHROMAT_FILE:
MSMg01no152_i22.b1 PHD_FILE: MSMg01no152_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:40 2005
         (376 letters)



>mm_chr19_18947578_18948353
          Length = 776

 Score =  679 bits (351), Expect = 0.0
 Identities = 369/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattccagaatatttcctttccagcatcctttattttttcccactagcaaaaactatta 61
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaattccagaatatttcatttcaagcatcctttattttttcccactagcaaaaactatta 600

                                                                       
Query: 62  tatataatagttttaaatataaagtgcaccttaaatcagaaggatatcttagtcttagaa 121
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 599 tatataatagttttaaatataaagtgcaccttaaatcaaaaggatatcttagtcttagaa 540

                                                                       
Query: 122 aacttttatatgaggttatataacatggtctatgaaggggctatctcttttctctcccaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aacttttatatgaggttatataacatggtctatgaaggggctatctcttttctctcccaa 480

                                                                       
Query: 182 taacaaatgagacactaattcaaataatgtatgattctttcttataaatggtttttaatc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 taacaaatgagacactaattcaaataatgtatgattctttcttataaatggtttttaatc 420

                                                                       
Query: 242 tatgctccacattctctagtttcctttctccgatgcaaactcagtgcacagtggtctgtg 301
           |||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 419 tatgttccacattctctagtttcctttttccgaagcaaactcagtgcacagtggtctgtg 360

                                                                       
Query: 302 gggacatctactgttggttttgtggagtttgccttctttttcccagagaggatggaacac 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gggacatctactgttggttttgtggagtttgccttctttttcccagagaggatggaacac 300

                          
Query: 362 taattttaattagaa 376
           |||||||||||||||
Sbjct: 299 taattttaattagaa 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)