BAC Information

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BAC

Clone NameMSMg01-152J02
Chromosome19 (Build37)
Map Location 8,270,823 - 8,271,326
singlet/doubletsinglet
Overlap geneD630002G06Rik
Upstream geneD930010J01Rik, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705
Downstream geneEG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152J02.T7 (MSMg01no152_j02.b1)MSMg01-152J02.TJ (MSMg01no152_j02.g1)
ACCAG354405AG354406
length826719
length of high quality
(start - end)
---542 (83 - 624)
definitionCHROMAT_FILE: MSMg01no152_j02.b1 PHD_FILE: MSMg01no152_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:41 2005CHROMAT_FILE: MSMg01no152_j02.g1 PHD_FILE: MSMg01no152_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCTCTGTCAAAACTGCTGCCGTTATATTATTCCCATATTGAGXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCCTCAACTCCAT
TCTACATATTACCTTCCAAGCGCCCCGTTTTTTTTTTTGGGTTGCTTGTC
TGCGCGATTCCACTTCACTCGTTTGCTTTACAATTCCTTGCTCGCCATAT
TCATTCGGTGAAGCCATTCTCTGTCTACTGGTATCCGATCTAATCCGTTT
ACTGACCGTTTACGGGCGCAAATTGACCTTATTGATCCGCTTTATTCCGA
CTGTTTCGCGCCATTGACGCGTTTACCCCCCTTATTCCCGCGCCACTAAT
TTTACCCCCTTATTTTTCCGCGTATCTTCCGGTACAGCCCCCTCCGTATC
TTCCTATCTTCTTCGTTTCCCTTTATTTCTTCCATACCCTTCCCGCGTCC
TTTTATCCCGCTATTTACTCTCTCGCCCGCTTTCTCCCCCCCCCCAAAGC
CCAAAAAAAAAATGAGTNNCCNGGCTTCTTTTTAAAANTTTATCCGCNCT
CCCGCNCCTNGAATTTCCGGGNACGCTTCCACCTTTATTAGNGGGCCTGG
NNNAAGCGTNCTNGCTTTTCGGTGNNNNANNNTNCTCCGAGCACCCCCCT
TCCCAGATGGNGGGGCTNNNNNNCTAGNNNGGGGGGGCCTANTTTTAGNA
CCCCCTANTCGTTTGTATTCTCACNG
TTTCTCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACAGTACATTGGTTA
ATATAGTGCCCTAATATCAGGTTATAGTCTGATCTGGGGAACAGTATTCA
GGTTCTGAGTACACAACACACAAGATGAATCCCAACAGGATCTCTTTCCT
TACCTCCTTTTAAAAAGACTTAACAATTACTACCACAGGGTCATCAATAT
AGGAATATTTGATCAGAAGTGACTCTACAAGGTGACCACAGACTTAATAC
ATAAAGACAAACTTATACAGAGAACTACAAACGACTCACGTGCCACACAT
TTCTTTTCATCCACACAACCTGTCAGTATTATTGTGTGTCAGGAGCCATC
TAGGAAAAACTAAGGGTAGCAGATGTCCTTCCTAGAGGTGGTTCACTTTT
TTGCATGGACTAAGGTGGGTAATCTCTGAGAGGCAAGTCAAAGAGACTTT
ATCTCTGGATTGCTTCTTGCAGCTGTTATTCCATTCCTATCATTATGAAA
TTAATTTAACAATCCCTAGGCATTAGCCAACCCTACTGAGCTGATTTCCT
GCAGATCAACATAAAGATTAACTTTCATGAATTAACGTTGTTTTGATGAA
TTAATGATTTTATAGAGTTCCTGTTTGATTCCAATAATCTTAGAAAGACC
GTTTTAAGGGGTGGTGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_j02.g1 MSMg01no152_j02.g1 CHROMAT_FILE:
MSMg01no152_j02.g1 PHD_FILE: MSMg01no152_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:41 2005
         (542 letters)



>mm_chr19_8270823_8271764
          Length = 942

 Score =  951 bits (492), Expect = 0.0
 Identities = 501/504 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacagtacattggttaatatagtgccctaatatcaggttatagtctgatctggggaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504 tttacagtacattggttaatatagtgccctaatatcaggttatagtctggtctggggaac 445

                                                                       
Query: 61  agtattcaggttctgagtacacaacacacaagatgaatcccaacaggatctctttcctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtattcaggttctgagtacacaacacacaagatgaatcccaacaggatctctttcctta 385

                                                                       
Query: 121 cctccttttaaaaagacttaacaattactaccacagggtcatcaatataggaatatttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctccttttaaaaagacttaacaattactaccacagggtcatcaatataggaatatttga 325

                                                                       
Query: 181 tcagaagtgactctacaaggtgaccacagacttaatacataaagacaaacttatacagag 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 tcagaagtgactctacaaggtgaccacagacttactacataaagacaaacttatacagag 265

                                                                       
Query: 241 aactacaaacgactcacgtgccacacatttcttttcatccacacaacctgtcagtattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactacaaacgactcacgtgccacacatttcttttcatccacacaacctgtcagtattat 205

                                                                       
Query: 301 tgtgtgtcaggagccatctaggaaaaactaagggtagcagatgtccttcctagaggtggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tgtgtgtcaggagccatctaggaaaaactaagggtagcagatgtccttcctagaggtggt 145

                                                                       
Query: 361 tcacttttttgcatggactaaggtgggtaatctctgagaggcaagtcaaagagactttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tcacttttttgcatggactaaggtgggtaatctctgagaggcaagtcaaagagactttat 85

                                                                       
Query: 421 ctctggattgcttcttgcagctgttattccattcctatcattatgaaattaatttaacaa 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  ctccggattgcttcttgcagctgttattccattcctatcattatgaaattaatttaacaa 25

                                   
Query: 481 tccctaggcattagccaaccctac 504
           ||||||||||||||||||||||||
Sbjct: 24  tccctaggcattagccaaccctac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)