BAC Information

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BAC

Clone NameMSMg01-152M02
Chromosome19 (Build37)
Map Location 17,436,752 - 17,437,040
singlet/doubletsinglet
Overlap genenone
Upstream geneGnaq, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik, Gcnt1
Downstream geneRfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152M02.T7 (MSMg01no152_m02.b1)MSMg01-152M02.TJ (MSMg01no152_m02.g1)
ACCAG354546AG354547
length1,412699
length of high quality
(start - end)
---289 (57 - 345)
definitionCHROMAT_FILE: MSMg01no152_m02.b1 PHD_FILE: MSMg01no152_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:57 2005CHROMAT_FILE: MSMg01no152_m02.g1 PHD_FILE: MSMg01no152_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTATCTTACACTACNAATATCCTTCCTCCCTTGTCCCAACCCCACCCC
TCTTCCCCCTCCCTCTCACCCTCCACNCCTCTCTTATACCTCTTGCCGCG
CCGCCTCACCACCCACCCCACTTTAGTCACGCCAGCCGGCAGCCGCGNCG
CGCAANNTNTCCCTCCTTTTTCGCACACACNACAGTACACTCCTTATATT
TCTCTATGCTCTTGACTCTCGCATCGCCTATGCCCCTTCACCCCTCTCTG
CCTACAACATATACCTCCTCGGGTCCTATCTCGCGGACCACAATCGAGAA
CCCACATCCCCCCCTCCTCCTCTCGAGTACAGCTTTCTGTTACTCTCCTT
CGTCACTCCTCGCCTCTCTCGTCACTCGGCCCTCGACCCCTGCTATCCTC
TCGCTTCTACTAGTAGTTTCTTATATTCAAGCGNGCAGTCTTCTCGCATC
CAGNCCCACATCACCTGTCACCGTCTTGCCTATCCCTGCGCCCCTTCTCG
CATGCCGCGCCCCTCCCACACCTTCTCCTTTTCCGTTATACTTAAGGGTA
ACCCCTACTCTTGCTCCTGTTTCCTTTGTCCTCTCTCCCACACCACCCTC
CCTTTACTCACTCACCACCTCGCCTTCTTCTTCCCCCCTGCTTTCTCTCT
CCTTTCACGTGCACCTCGCCCCCTCCTCTCCTCACTCTCGCAATACCAGA
AACACCCTCGATCCCACTTATGTTGTCCAATGACTTTCTTTANTATTTGT
ACCTTTCTTTCCCGTTCTTGCTACATACTCCAACCCCCTTTATCCGTCTC
TCCTCTCCTCCCTCGACTGTCATTTGAGTANTTTACAAACTACCGTTCTC
TAGCTCGCCGCACTCACTTTCCCATTATACACACCCACATTCCTACCGTC
ACGCTTGTCGCCCTAACGCGTACGCCTATATATACTCCCATCTCTATCTC
ACCGCTACTCTCTTCTTTCACAGCCATCCNTTCGCCGCCACGACCACACA
CCTCTATGTACTCCTTCTCTATCTCCTCCTGCTTTCTCACTCTTCTTATC
TCCCTATCACGCTTCTTCTACAATTTCTGTGTCTTCTATGTCTCCAGCTC
TCTCCGCAACTTCATTTATCTGACACTACGACCACGCTCTACTCCTCCAC
CCACTCTATATACTCCCGCTTCCAANCGNTCGCTCATTCATACCTTATCT
GCTGTTACCTTCACTCTCTCCATCTCTTGCTACCTCCANACATCACCGTC
TGATTCCCCGATAAGTATATACGCTCCACGTATCCGCGTCGCCTCGCACT
CCCATTTATATTATCTCTCGCCCTTGCTCATATCTACCATACCCACTCCC
GACTCCGCCTCACATATATGTTATCCCATACCACTCGTCTCTCTCCCCCT
TTATCTGCTTCN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCATCTTCAGCAGGTACAACAACAGAAGAGTGAGAAAATAAGTTC
CTGCTGTACAGGTCACGGAATCTGAGGTGAAACTCAAAGAGCAGAAGAAA
GACACACACTTAGGTGCATCCTCTAGCAGGTTCAAGAAGCCCAATTAAGC
CTGAGAATATACAGCTCACAATTTTGTTGGTTTGCTTGTTTGTTTTCAGG
ATCTTGTTCTTTAGGCTAGGCTATGTAGCACAGGCTGACCTCAAACTCAA
ACTGCTCTCTCTCCCTCTTCTAAAATGCTGGTACTAGAGGCATGAGCTAC
CAGGGCATAGCTCATGGTTTCTATAGCTACAGACTTCCCTGTAGCATACC
TTTACAGCCTATAAACGTTAAACACCATTATTAACAGATCAAAATGATGT
ATTCTCCCAGTATCATAAAAACAAGAGGCAAAAATTCTTTCATATAAACA
GTTACCCCTCTGTTATTCTACCTGACCTAAAACCACTCTATGCAGTTGTT
AACGAGTATCCATTAATTAAACCGATTTTGTACAATTCTGGCCAATGGGG
AGCTGTTTCTGCCCCTTGTTGCTAAACAACCCCTCAGTTAATTTTTTAAA
AATTTTCCGTCCATGAGCGCCCTGTCTACATGGAAGCCTGCATTCCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_m02.g1 MSMg01no152_m02.g1 CHROMAT_FILE:
MSMg01no152_m02.g1 PHD_FILE: MSMg01no152_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:57 2005
         (289 letters)



>mm_chr19_17436646_17437334
          Length = 689

 Score =  497 bits (257), Expect = e-145
 Identities = 281/289 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcttcagcaggtacaacaacagaagagtgagaaaataagttcctgctgtacaggtcac 60
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || 
Sbjct: 395 catcttcagcaggtacaacaagagaagagtgagaaaataagttcctgctgtacaggccat 336

                                                                       
Query: 61  ggaatctgaggtgaaactcaaagagcagaagaaagacacacacttaggtgcatcctctag 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 335 ggaatctgaggtgaaactcaaagagcagatgaaagacacacacttaggtgcatcctctag 276

                                                                       
Query: 121 caggttcaagaagcccaattaagcctgagaatatacagctcacaattttgttggtttgct 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 275 caggttcaagaagcccaattaagcctgagaatatacagctcacaatttcgttggtttgct 216

                                                                       
Query: 181 tgtttgttttcaggatcttgttctttaggctaggctatgtagcacaggctgacctcaaac 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 215 tgtttgttttcaggatcttgttctttaggctaggctatgtagcataggctgacctcaaac 156

                                                            
Query: 241 tcaaactgctctctctccctcttctaaaatgctggtactagaggcatga 289
           ||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 155 tcaaactgctctctctccctcttctaaaatgctagtaccagaggcatga 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)