BAC Information

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BAC

Clone NameMSMg01-153C04
Chromosome19 (Build37)
Map Location 23,638,778 - 23,639,409
singlet/doubletsinglet
Overlap gene1700028P14Rik
Upstream geneTrpm3, Klf9, Smc5, Mamdc2
Downstream geneLOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153C04.T7 (MSMg01no153_c04.b1)MSMg01-153C04.TJ (MSMg01no153_c04.g1)
ACCAG354817AG354818
length697697
length of high quality
(start - end)
568 (45 - 612)637 (61 - 697)
definitionCHROMAT_FILE: MSMg01no153_c04.b1 PHD_FILE: MSMg01no153_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:26 2005CHROMAT_FILE: MSMg01no153_c04.g1 PHD_FILE: MSMg01no153_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCCTACTATGATTTCACTTCCTTACCATTATAAATATTAGCCCATTAT
CAGTTGCAAGGCTTACAAATATTTTCTATCTTGATCTATTCTGATAAAAA
TACCTTATGGTGGGTAATTTATAAATAACAAATTTATTGTTCATAATTTT
GGAGGCATCAAAGATTCTGTAGTAAAGGGTCACTTTCTGCTTCAAAGAGG
CACCTTGTTGCTGTGTATTCTTATGATGTAAAAGCAAGCAAGTTCCCCGA
AGCCTGTTCATGCTAGCCCTCTCCTGATCATGGCAGCGTAACCGTAAAGC
ACTCATGAGAATTCTCTCTCGAAGGCCCTAATTTGTAATACCATCATCTT
GGTGGTTAGATTTCCACGACATTTTCATTCTGTAGTCTGTCTCCTTACTC
GGCTGGTTCCTTTGCTGATAAGTACTGTATTTTCATGGAATCCCACTGGC
CTGGTTTTACTTTTGTTCTCTGTGATTTCAGGGTTATATTGGGGGGGGGG
GATTGCCAAGAGCTCTCACCTGGTCTTTGCTTTACTAGTGTCCAGGTGTC
TTATTTAAGTCCCTCAGATGTTTGAGTTACTCTGTATACAGTCCTGTTTC
TTTAACTCTGGGTGTTGATCCCTTATAGGCTCATGTAACCGAATATA
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCCGAATTCTCCGAGGTTGTGTCAAATTGGAGGAGTGG
TGTTCTGGGAGCCAATGGTGCCCATGACTGGGTCTAAAAAGAAGTGAAGG
CAGAAAGGAGCAGTGGCCAGGAGACAAGTGTAGATCTAGGATGACCAGGG
AGGTTAAAGTATTCAGTGGAAGCCACTAACACTAACTTTGAAAGATGCGA
CAGAACAAAATGCAACGGGATGAATCAATTTCTAGTCACCTGAGCATATG
CTGCTCAGAAAAGGGTTAAGGGAATTGAATAAAACATGCTGGTGAAAGGC
ACAGAACACAGGAATGCTGGGTGTAAACAGCCCTGCAGACACCAGAAGCC
ACTGAAGCTGCAGCAAGAGCATAAAGAAGGCTAGCCTGGGGAAAACCGGC
CAAGGAGGTTTCTTCTTCTCATTCGTTTGTTGTGCTTCCCTGTTTCTCTT
CTATGGATTATGGCAAGGCCCCCTAGGATGTTACCATAGGCTTCTGGGCG
AGTGGGTTTCTCAACCGACTTTCACATAGTTCAGACAAGTGACATGTTTT
ATCATTATAGACTGATAACACCATTCATAGCATCTTTACATAACAGGCTG
GCCCAAGCCCACGCTGCCCCACACCCTGTGCTTACTGGTTGCTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_c04.g1 MSMg01no153_c04.g1 CHROMAT_FILE:
MSMg01no153_c04.g1 PHD_FILE: MSMg01no153_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:26 2005
         (637 letters)



>mm_chr19_23638573_23639609
          Length = 1037

 Score = 1137 bits (588), Expect = 0.0
 Identities = 621/632 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctccgaggttgtgtcaaattggaggagtggtgttctgggagccaatggtgcccat 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctccgaggttgtgtcaaattggaggagtggtgttctgggagccaatggtgcccat 265

                                                                       
Query: 66  gactgggtctaaaaagaagtgaaggcagaaaggagcagtggccaggagacaagtgtagat 125
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 266 gactgggtctaaaaagaagtgaaggcagaaaggagcagtggccaggagattagtgtagat 325

                                                                       
Query: 126 ctaggatgaccagggaggttaaagtattcagtggaagccactaacactaactttgaaaga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctaggatgaccagggaggttaaagtattcagtggaagccactaacactaactttgaaaga 385

                                                                       
Query: 186 tgcgacagaacaaaatgcaacgggatgaatcaatttctagtcacctgagcatatgctgct 245
           ||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 386 tgcaacagtacaaaatgcaacgggatgaatccatttctagtcacctgagcatatgctgct 445

                                                                       
Query: 246 cagaaaagggttaagggaattgaataaaacatgctggtgaaaggcacagaacacaggaat 305
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 cagaaaagggttaagggaattgaataaaacatgctggtgaaaggcaccgaacacaggaat 505

                                                                       
Query: 306 gctgggtgtaaacagccctgcagacaccagaagccactgaagctgcagcaagagcataaa 365
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 506 gctgggtgtagacagccctgcagacaccggaagccactgaagctgcagcaagagcataaa 565

                                                                       
Query: 366 gaaggctagcctggggaaaaccggccaaggaggtttcttcttctcattcgtttgttgtgc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaaggctagcctggggaaaaccggccaaggaggtttcttcttctcattcgtttgttgtgc 625

                                                                       
Query: 426 ttccctgtttctcttctatggattatggcaaggccccctaggatgttaccataggcttct 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttccctgtttctcttctatggattatggcaaggccccctaggatgttaccataggcttct 685

                                                                       
Query: 486 gggcgagtgggtttctcaaccgactttcacatagttcagacaagtgacatgttttatcat 545
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gggcgagtgggtttctcaactgactttcacatagttcagacaagtgacatgttttatcat 745

                                                                       
Query: 546 tatagactgataacaccattcatagcatctttacataacaggctggcccaagcccacgct 605
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 746 tatagactgataacaccattcatagcatctttacataacaggctggcccaagcccacgat 805

                                           
Query: 606 gccccacaccctgtgcttactggttgctatat 637
           ||| ||||||||||||||||||||||||||||
Sbjct: 806 gcctcacaccctgtgcttactggttgctatat 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)