BAC Information

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BAC

Clone NameMSMg01-153F13
Chromosome19 (Build37)
Map Location 48,863,142 - 48,863,452
singlet/doubletsinglet
Overlap geneSorcs3
Upstream geneD19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896, LOC629448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153F13.T7 (MSMg01no153_f13.b1)MSMg01-153F13.TJ (MSMg01no153_f13.g1)
ACCAG354972AG354973
length763729
length of high quality
(start - end)
311 (109 - 419)250 (70 - 319)
definitionCHROMAT_FILE: MSMg01no153_f13.b1 PHD_FILE: MSMg01no153_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:42 2005CHROMAT_FILE: MSMg01no153_f13.g1 PHD_FILE: MSMg01no153_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCATCTTTTTGCTAAGGAATCAACATCCGCAAATGTAGACTTCAATGG
ATGGAGAAGTCAAATTGAAAGATAAACAGATAACTGGTAGTCATCTGTTG
TCCCTTGTACAGGAACAAATCTTGTGGTGCTTCTAGATGACCATATGTTT
TGGATAGTTGTTAGACAAGGAAAGCTAAAATAGATGAATGAGCTCAATAT
GATGATCTGCTAAGTTGTCTACAACATGTATGCAGCGTTTACAGTGTTAC
ATGGGACAAGGGATCTATCTACTAAGCAAGAGGAGCAATGATCCCCATCC
TACAGAACTCATATCTTGGGTAATGAGATGATCTATACAGATCAAATGTA
GTTTTCCAGATGTGATTGTTGGAAATTCTAGCATCATTGTTTGCAAAGGT
TTTATAATTGAGCCTAAAATCATAAGCTTATGTTGCTTTATACCCATGAT
ATAATAATATATGCCAGGAAATTTATTAGCAAAATTGTCTATTAGAATAA
TGCATAATACCGAGGCCGTTATGACAGAGCGTTCTATTACCGTCTTTTCC
AATGCTTTCTTCTCTCCCTCCGAAATTGTCTATTCACTACCCCTAATATT
ATTACACCTATTCCTTTACCTTCCTACTCCCATTTCCCCCTTTTTACCTA
CTTATCACCTCTAACACCAATTGCGCACCGCACTCTTTGCTTCTCTCCGT
CCTTGTTTTCTAA
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGGACAGTGAGAAATGCTGTTTCAGGAGAA
AAGAAAGTAGATACCCCTGAGGAATGACTCTAGATTTCTCTTCTCCAGGT
ATACACACACACACATATGGAGAGAGAGAGAGAGAAAGAAAGAGAGAGAG
AGAGACCCACACAAGACAGACACACACACACAAACACACATACTCAGAAA
GAAAGAGAGACTCTGATACACACATACACATAAACACACACACACATATA
GACACAGACATACACACAGACACACATATAAGAAGACACACACACACACA
TACACACACACACAGGTCAGTCAATGTATTAGCAGCTTCCACAACAGGCT
AAATAAAGACGCCTTTTGCAAACTTCCTAAGTTCAGACTAAAAGGAGAAC
AGCTTTTGAAAGTTACATGAAAAGAAGCATATATTGAGATGTGTCTTTGG
GGGTATGGCTCGGGGTGGGGGAGACCCTGCCAATGCATCCGTGAAGCTTA
NAGAGCTTTTCTCTAAAAAGAAATCAGGTAATTCATTTTGAGTCACAGTT
AAGCACTTGGCTTAGTTCTCTTTCATTTTTCTTCTTTTAAATCTCTGACT
AAATTAATTAACTGAGTGTTTATAACTGGCAGCCATACTGACCCCGCGCG
GCTATGTTCGCGGTAAGTCATCAACGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_f13.b1 MSMg01no153_f13.b1 CHROMAT_FILE:
MSMg01no153_f13.b1 PHD_FILE: MSMg01no153_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:42 2005
         (311 letters)



>mm_chr19_48862942_48863652
          Length = 711

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%), Gaps = 2/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcaaattgaaagataaacagataactggtagtcatctgttgtcccttgtacaggaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcaaattgaaagataaacagataactggtagtcatctgttgtcccttgtacaggaacaa 260

                                                                       
Query: 61  atcttgtggtgcttctagatgaccatatgttttggatagttgttagacaaggaaagctaa 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 atcttgtggtgcttctagatgaccatatattttggatagttgttagacaaggaaagctaa 320

                                                                       
Query: 121 aatagatgaatgagctcaatatgatgatctgctaagttgtctacaacatgtatgcagcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatagatgaatgagctcaatatgatgatctgctaagttgtctacaacatgtatgcagcgt 380

                                                                       
Query: 181 ttacagtgttacatgggacaagggatctatctactaagcaagaggagcaatgatccccat 240
           ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ttacagtgtgacatgggacaagggatctatctacaaagcaagaggagcaatgatccccat 440

                                                                       
Query: 241 cctacagaactcatatcttgggtaatgagatgatctatacaga-tcaaatgtagttttcc 299
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 441 cctacagaactcatatcttgggtaatgagatgatctatacagagt-aaatgtagttttcc 499

                       
Query: 300 agatgtgattgt 311
           ||||||||||||
Sbjct: 500 agatgtgattgt 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)