Query= MSMg01no153_i07.b1 MSMg01no153_i07.b1 CHROMAT_FILE:
MSMg01no153_i07.b1 PHD_FILE: MSMg01no153_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:54 2005
(667 letters)
>mm_chr19_31452094_31453164
Length = 1071
Score = 1236 bits (639), Expect = 0.0
Identities = 659/667 (98%), Gaps = 4/667 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggtatatgctctcatcccagcactaaggacaggcctcttgaatctaagtctg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggtatatgctatcatcccagcactaaggacaggcctcttgaatctaagtctg 264
Query: 65 ccaggacattgtccctacttccctcagcctttaaatgtatactgatgagtctttgtacct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaggacattgtccctacttccctcagcctttaaatgtatactgatgagtctttgtacct 324
Query: 125 ctttgggtacaattttggttgagaattctaaaaaagaaaagtttcaagtacttcccattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttgggtacaattttggttgagaattctaaaaaagaaaagtttcaagtacttcccattt 384
Query: 185 tttaaccaagtagtccttatataattaactgaccaaattaaggcttgacaaagactggat 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 tttaaccaagtagtccttatataattaactgaccaaattaaggcttgacgaagactggat 444
Query: 245 tctaaatccagagggctgtgagttccactctgctatacttttttttttttt--aatgctc 302
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 tctaaatccagagggctgtgagttccactctgctatactttttttttttttttaatgctc 504
Query: 303 tgcagaagtggcttctcaaatcatcctctgctctttgaataaacatgataaaacaaaaat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcagaagtggcttctcaaatcatcctctgctctttgaataaacatgataaaacaaaaat 564
Query: 363 gaaaatatgttcaaagagaattcatttagtggttatcttgatgtcttgatcaaacagagt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaaatatgttcaaagagaattcatttagtggttatcttgatgtcttgatcaaacagagt 624
Query: 423 gaagttctctttcaggtggtgtctttcctctctgtcaatgtcccttatttatcagccaca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaagttctctttcaggtggtgtctttcctctctgtcaatgtcccttatttatcagccaca 684
Query: 483 tacactctcaacccggactgctattt--ttcatcaccacaggattgcgatgacagcaaga 540
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 685 tacactctcaacccggactgctatttctttcatcaccacaggattgcgatgacagcaaga 744
Query: 541 tagaatcacaaagaagcataagaaaaactagagactctatagacttgtcattatatgtag 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 745 tagaatcacaaagaagcataagaaaaactagagactctacagacttgtcattatatgtag 804
Query: 601 ttcctcaaacagagctgccaatctaagacaaatgccttggttctgagaaagcccccgagt 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 805 ttcctcaaacagagctgccaatctaagacaaatgccttggttctgaggaagcccccgagt 864
Query: 661 catttca 667
|||||||
Sbjct: 865 catttca 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1071
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1061
Effective search space: 697077
Effective search space used: 697077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_i07.g1 MSMg01no153_i07.g1 CHROMAT_FILE:
MSMg01no153_i07.g1 PHD_FILE: MSMg01no153_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:54 2005
(241 letters)
>mm_chr19_31597603_31598243
Length = 641
Score = 443 bits (229), Expect = e-129
Identities = 238/241 (98%)
Strand = Plus / Minus
Query: 1 tagaaacaagaaaactggcctgactcgtctatgaatttcacttggagtgggattctctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaaacaagaaaactggcctgactcgtctatgaatttcacttggagtgggattctctat 382
Query: 61 tcttatataaagaaaaagaagaaaacatgctacatttccaaacttggtctatactctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttatataaagaaaaagaagaaaacatgctacatttccaaacttggtctatactctggt 322
Query: 121 cccgtgtagtcaactgctttataactatgttcagaaaatagtcaagagagtttatgagcc 180
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 321 cccgtgtagtcaactgctttataactatgttcagaaaatattcaagagattttatgagcc 262
Query: 181 taaaattgtcccaaatgtttaggagcagaatttaggccttgaacattccctatgcccaac 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaattgtcccaaatgtttaagagcagaatttaggccttgaacattccctatgcccaac 202
Query: 241 a 241
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
