Query= MSMg01no154_f07.b1 MSMg01no154_f07.b1 CHROMAT_FILE:
MSMg01no154_f07.b1 PHD_FILE: MSMg01no154_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:56 2005
(649 letters)
>mm_chr19_20143414_20144462
Length = 1049
Score = 1174 bits (607), Expect = 0.0
Identities = 640/651 (98%), Gaps = 2/651 (0%)
Strand = Plus / Plus
Query: 1 agatggtctagaatcatggaatttcttatgatttttaaggacttgccacaggtaacacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatggtctagaatcatggaatttcttatgatttttaaggacttgccacaggtaacacat 260
Query: 61 aacaagaggatgctttcatgtaaatgtagattaaaactacaaatgagacgtctgcatgga 120
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aacaagaggatgttttcatgtaaatgtagattaaaactacaaatgagacatctgcatgga 320
Query: 121 tcacattcttagtggtatctaaattgcagtttggggtgaccataacccagccttaagaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacattcttagtggtatctaaattgcagtttggggtgaccataacccagccttaagaac 380
Query: 181 aggagattgtaataaaatttcataaaacaatctggcctcaaacttgaaaaactaagcatg 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 aggagattgtaataaaatttcataaaacaatctggcttcaaacttgaaaaactaagcatg 440
Query: 241 tgccaaatgaaaccaaaaaattttcaaagcttctgtaaagcaaagaacactgtcaatagg 300
||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 441 tgccaaatggaaccaaaaaatttgcaaagcttctgtaaagcaaaggacactgtcaatagg 500
Query: 301 acaaaacagccaccaacagacttg-aaaagatctttagtaatcctatatccagtagaggg 359
|||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct: 501 acaaaacagccaccaacagacttggaaaagatctttagcaatcctatatccggtagaggg 560
Query: 360 ctaatatccaatatatacaaagaactcaggactccagacaatcaaataatcctatttaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaatatccaatatatacaaagaactcaggactccagacaatcaaataatcctatttaca 620
Query: 420 aaatgggttacagagctaaacaaagaattctcaactaagtaataaggaatgaccaagaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatgggttacagagctaaacaaagaattctcaactaagtaataaggaatgaccaagaag 680
Query: 480 cac-taaagaaatattcaatatccttagtcatcagggaaatgcaaatcaaaacaaccctg 538
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacctaaagaaatattcaatatccttagtcatcagggaaatgcaaatcaaaacaaccctg 740
Query: 539 agattcctcctcatactggtaagtcagaatggctaagttcaaaatctcaggtggcatcag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agattcctcctcatactggtaagtcagaatggctaagttcaaaatctcaggtggcatcag 800
Query: 599 atgctggtgaggatgtgtagaaagaggaacactcctccattgctggtggga 649
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagctggtgaggatgtgtagaaagaggaacactcctccattgctggtggga 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_f07.g1 MSMg01no154_f07.g1 CHROMAT_FILE:
MSMg01no154_f07.g1 PHD_FILE: MSMg01no154_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:56 2005
(638 letters)
>mm_chr19_20274967_20276005
Length = 1039
Score = 955 bits (494), Expect = 0.0
Identities = 542/558 (97%), Gaps = 1/558 (0%)
Strand = Plus / Minus
Query: 81 aagactgcagaaaaaggaagtgatgtttaagtaattccataaaaggcaggaaaaagaagg 140
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aagactgcggaaaaaggacgtgatgtttaagtaattccataaaaggcaggaaaaagaagg 779
Query: 141 tgagtttaaaacacgaagcaa-taaatacaaatattcaaagatatacacacatcagcttt 199
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tgagtttaaaacatgaagcaattaaatacaaatattcaaagatatacacacatcagcttt 719
Query: 200 aacaaatgctaaatattgaagttcaaatgggcaatctctagtattttaagtttgaaagat 259
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 718 aacaaacactaaatattgaagttcaaatgggaaatctctagtattttaagtttgaaagat 659
Query: 260 tttttaataagtcaatattatcaggtgtagttagttttaatggaaaaccctaaaattagt 319
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 658 tttttcataagtcaatattatcaagtgtagttagttttaatggaaaaccctaaaattagt 599
Query: 320 tgggttaatgaccagctatgattttaacactcagctgagtgtccttgcacttacctttcc 379
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 598 tgggttaatgaccagctatgcttttaacactcaactgagtgtccttgcacttacctttcc 539
Query: 380 cacatgctaagagtaattcatgacagttatttggggtggttatttatgggacagaaagag 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cacatgctaagagtaattcatgacagttatttggggtggttatttatgggacagaaagag 479
Query: 440 tggcaagtatggggcctcatccccacagggtgagatacaagctttctgtacagcagattt 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tggcaagtatggggcctcatccccacagggtgagatacaagctttctgtacagcagattt 419
Query: 500 ggaaccatgagcacagcgccactattgccagctgcaggatggcgtcagtaatttggacag 559
|| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 418 gggaccatgagcacagccccactattgccagctgcaggatggtgtcagtaatttggacag 359
Query: 560 tgcttgcatttcagatactgtctacattttcatgacaagagagcttcttgggtaaatatg 619
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 358 tgcttgcatttcagatactgtctacattttcatgacaagagagcttcttggttaaatatg 299
Query: 620 agctacatttttttctgc 637
||||||||||| ||||||
Sbjct: 298 agctacattttcttctgc 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
