Query= MSMg01no155_a17.b1 MSMg01no155_a17.b1 CHROMAT_FILE:
MSMg01no155_a17.b1 PHD_FILE: MSMg01no155_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:51 2005
(627 letters)
>mm_chr19_31326917_31327943
Length = 1027
Score = 1083 bits (560), Expect = 0.0
Identities = 588/602 (97%), Gaps = 8/602 (1%)
Strand = Plus / Minus
Query: 26 gagagattttgtgtacttaaacaatacatgatatggcctgatttgtctcagaaagtttgt 85
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1027 gagagattttgtgtacttaaacaatatatgatatggcctgatttgtctcagaaagtttgt 968
Query: 86 tctactagcatcagtgtaaaagaaggatcgcagaaatcaagtatagattctgagaggcta 145
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 967 tctactagcatcagtgtaaaagagggatcgcagaaatcaagtatagattctgagaggcta 908
Query: 146 ggataaagattcttagacaatgaagacctgagctagagaactaagtataaactatagaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 ggataaagattcttagacaatgaagacctgagctagagaactaagtataaactatagaag 848
Query: 206 agaaaacagaagcaagaaccagagagagagagagagatttaaaagaaaatagaaaattaa 265
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 847 agaaaacagaagcaagaacc--------agagagagatttaaaagaaaatagaaaattaa 796
Query: 266 gcaaccatcatctcttaaatatttctgtgtgtgtgtcagaataaggatgacatgttgcct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gcaaccatcatctcttaaatatttctgtgtgtgtgtcagaataaggatgacatgttgcct 736
Query: 326 cattaattctgtgtccctcatagttttaaaggctagtcaaggatgactggattctgaaca 385
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 735 cattaattctgtgtccctcatagttttaaaggctggtcaaggatgactggattctgaaca 676
Query: 386 aaataatgactctttcatatttctcatggttatgatattattcttggctgcacatattta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 675 aaataatgactctttcatatttctcatggttatgatattattcttggctgcacatgttta 616
Query: 446 aagggggaacatattttaattttccatcattgctcaaagtaagagctcaagtaagttgga 505
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 615 aagggggaacatattttaattttccatcattgctcaaagtaagagctcgagtaagttgga 556
Query: 506 gagtttatatgcatgatctctttgaagaggggcatgtgctccataactcaggaagcatgg 565
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 555 gagtttatatgcatgatctctttgaagagaggcatgtgctccataactcaggaagcatgg 496
Query: 566 aaaatatttaaagccaaacctccattagtctgatgataatattttatggaggaagttgag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaaatatttaaagccaaacctccattagtctgatgataatattttatggaggaagttgag 436
Query: 626 cc 627
||
Sbjct: 435 cc 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_a17.g1 MSMg01no155_a17.g1 CHROMAT_FILE:
MSMg01no155_a17.g1 PHD_FILE: MSMg01no155_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:52 2005
(594 letters)
>mm_chr19_31183125_31184123
Length = 999
Score = 1031 bits (533), Expect = 0.0
Identities = 581/603 (96%), Gaps = 13/603 (2%)
Strand = Plus / Plus
Query: 1 catattcttacagtcatcagaaagaggttcttaggaaaaaaacccacttcaaatttatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catattcttacagtcatcagaaagaggttcttaggaaaaaaacccacttcaaatttatcc 260
Query: 61 aaatttatcccaaatcagtgaactttaaatccttgtacagaaaacagaaatcaagggcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatttatcccaaatcagtgaactttaaatccttgtacagaaaacagaaatcaagggcac 320
Query: 121 ttgccagtgatagggcacttgccagaaaacatttgacttaggttacaagtaaataactac 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ttgccagtgatagggcacttgccagaaaatatttgacttaggttacaagtaaataactac 380
Query: 181 tatcctttgatcttaacttagtaaataagtccaagtagtgtatgctgttgctcatctctg 240
|| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 381 tagcctttgatcttaacttagtaaatacgtccaagtagcgtatgctgttgctcatctctg 440
Query: 241 gtctagatgctgcagaatccagaacttggaacggctaaagcaccatctcaggcaaactaa 300
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gtctagatgctgcagaatccaggacttggaacggctaaagcaccgtctcaggcaaactaa 500
Query: 301 gacagaatgttattttagacttaatggtgtttaggtttttttccctttgctagattatgt 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 gacagaatgttattttagacttaatggtgtttaggtttttt-ccctttgctagattatgt 559
Query: 361 cttggcttaagaaaatcttctgctttttttt--------aaataacattttacttgttgc 412
|||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 560 cttggcttgagaaaatct---gcttttttttttttttttaaataacattttacttgttgc 616
Query: 413 ttacagagtcggtctttttcaacatgaaaaggatatgacacagtaactcctatccactca 472
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 617 ttacagagtcggtctttttcaacaggaaaaggatatgacacagtaactcctatccactca 676
Query: 473 ctcctgctgtcagtaaaaatgccctactgtacc-acttatacacatatttcagccatttc 531
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 677 ctcctgctgtcagtaaaaatgccctactgtaccgacttatacacatatttcagtcatttc 736
Query: 532 ccagatattttagagtaccatggccttgctagaacagagaccctttaaggttcttttatt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccagatattttagagtaccatggccttgctagaacagagaccctttaaggttcttttatt 796
Query: 592 att 594
|||
Sbjct: 797 att 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 999
Length adjustment: 10
Effective length of query: 584
Effective length of database: 989
Effective search space: 577576
Effective search space used: 577576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
