BAC Information

Click to search

BAC

Clone NameMSMg01-156J18
Chromosome19 (Build37)
Map Location 56,492,677 - 56,492,922
singlet/doubletsinglet
Overlap geneCasp7
Upstream geneVti1a, LOC100043479, Tcf7l2, Ppnr, LOC100043484, Habp2, Nrap
Downstream gene9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156J18.T7 (MSMg01no156_j18.b1)MSMg01-156J18.TJ (MSMg01no156_j18.g1)
ACCAG357305AG357306
length730725
length of high quality
(start - end)
317 (46 - 362)251 (77 - 327)
definitionCHROMAT_FILE: MSMg01no156_j18.b1 PHD_FILE: MSMg01no156_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:47 2005CHROMAT_FILE: MSMg01no156_j18.g1 PHD_FILE: MSMg01no156_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTTAAAACTTAGCTGGAGACTAGCAAGTTGGCTCTACAAGTA
AATGAGCCTGTTTCCAAGCCTGACAGCTGGAGTCTGACTCTAACCTTAAC
GATGGAAGGAAAGCGCTGACTCCTAAGAGTTGTCTTCTGACTATCCCAGG
ACACGCAAGCACCCTTCTTCTCCCCAACGCACAACAAACAAACAAAGAAA
CAAATAAATAAATGTAACAAATAATATTAGGTGGCTATGGTGGCATATTC
TTGTAATATCAGCACTTTGGAGGCAGGAAGATGGCTGTGAATTCAAGGTG
AGTCTGGGACTTTTTGAGGTCCCGCCCCCCCCGAGCTAGAGACAGACTGT
CTAAAAACCATCAAGTCACCGACCATGTTAAGAGTTGGCAGTATTCTTAG
AGGCACACTTGAGAATACCATTTGCTGATGGTTTTTGTTAAAAAAGAACA
TTGTTGGGCTGGGTACAGAGGCACATGCTTTTAATCCCAGTTCAAGAGGC
AGAGGCAGGTCTATCTCTGAGTTCCAGAGCAGCCTGAGCTACACAAAGCG
CTATAGGACAACCAGAAGTATATGTAAGACCCTGCTAAGAAGAAGAGCAC
TTACCTACATCACTTTGCATGTCATAGCATATTGAAATCTGGGTGAGAAG
ATGGCTCAGCTGGCAATGTGCCTGTTGTAA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCTAATCCCAAGCTAAAAATT
CTTTTATGAAACTCACATCAGTAAGTCACATCGCAGTTTCAAACATTCCA
ACACAAGCCAGTCTAAAGCTACACTAAGAGAATACTTTTGTGTGAAAATG
AGAATAAGGATATATTTACTTTATATTATTTTCTTTTACTGGGTTTATTG
GGGTTTTCATTAGGTTTTGTTTGTTTTGTTCTTATTTTTACTTTTTGGAA
ACAGGATCTTGCTATTTAGCCTTGTCTGTCCTGGCACTTGCAGTGTAGAT
CAGTCTGACCTTGTTTTTCTGACCCCCCCCCGCTTCTGCCTCTGGAAACG
TTGGTATTAGAGGCGTGCCCCGCCACACAAGACAAAAAGCGTGAAGCCTG
TTTTCTGTAATTAAACCATCATGTTTCCTTAAAGGCAGAAACTTCCCTAT
GTATTAGGGACACCGTAGTTCACAACACACGGTAGTCTTGTACCTGTGCC
AAAGTTGTTCTGCGTTCCCTGGCTTTTCTGCCTCTAGCATAGTGCTACAC
TCGGATCTTTCTCCTCGTTCCCTCCCCCCCGCCTAAAAGCTTTTCTCGAT
TCCCCCCGCCCTCCGCCTTTCCTCCTTTTCCTTTTTCTGCATGCTTATCC
CCCCTTTTTTTTTCTCCCTTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_j18.g1 MSMg01no156_j18.g1 CHROMAT_FILE:
MSMg01no156_j18.g1 PHD_FILE: MSMg01no156_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:47 2005
         (251 letters)



>mm_chr19_56492475_56493125
          Length = 651

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ttctaatcccaagctaaaaattcttttatgaaactcacatcagtaagtcacatcgcagtt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttctaatcccaagctaaaaattcttttatgaaactcacatcagtaagtcacatcgcagtt 262

                                                                       
Query: 63  tcaaacattccaacacaagccagtctaaagctacactaagagaatacttttgtgtgaaaa 122
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 263 tcaaacattccaacacaagccagtctaaagctacgctaatagaatacttttgtgtgaaaa 322

                                                                       
Query: 123 tgagaataaggatatatttactttatattattttcttttactgggtttattggggttttc 182
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 323 tgagaataaggatatatttactttatattattttcttttattgggtttattagggttttc 382

                                                                       
Query: 183 attaggttttgtttgttttgttcttatttttactttttggaaacaggatcttgctattta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attaggttttgtttgttttgttcttatttttactttttggaaacaggatcttgctattta 442

                 
Query: 243 gccttg 248
           ||||||
Sbjct: 443 gccttg 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)