BAC Information

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BAC

Clone NameMSMg01-156O17
Chromosome19 (Build37)
Map Location 13,260,553 - 13,260,863
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461
Downstream geneOlfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156O17.T7 (MSMg01no156_o17.b1)MSMg01-156O17.TJ (MSMg01no156_o17.g1)
ACCAG357535AG357536
length734749
length of high quality
(start - end)
314 (36 - 349)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no156_o17.b1 PHD_FILE: MSMg01no156_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:10 2005CHROMAT_FILE: MSMg01no156_o17.g1 PHD_FILE: MSMg01no156_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAGC
TTGTTCTGTGTGAAAATTCTGTCCTCTTCTCTTGCTTTAGACAAGCTGTA
AATATTGACTACTTCCTAAGATCAAACTTCTGGAAGAAGATTTACAAAAA
AAAAAAAAATCACATTTTATCACAGATTTTTAAGATGTTAAAGTGACCAT
TCTGTGTATAGTATTCTCTTATTAAAAATTGGCTACTTAGATTTCATAAT
CATATTAGTGAGAAGTAGAATTCACTTTAAATAAATGGGACGTGTATACC
TACTATGAGTTACTTGAAAACAGTTGTTTAATAATAATTTTGAGGGCTAT
ATTTTTAAAGCCCCCCCGCCCCAAGGCTATTCTTCTAAGAATAATTTTGA
GATGTTGAGCATGAAAGAATAAAACACTGCAAGAACTTTGATGATTCATA
TAAATAAATTATTATTCTTACACAGAATGTAAGATGTAATTTGGTTGATA
TAACTTTATTTTGTTCACTTCTTCTTCTTTTTTTTTTTGATGGATCTAAT
TTGCTTTATTTGTAACTTATCAGATAGGGCAGCCTTCATCCAACTAAGTA
TAATGAGAACTCCCACCAAGAAGCAGCATATGCAGACTCCTGTTTTATAA
GGTGAGAAATGATTCAGCCTTACGAGTTATCTAACTAATATCGGTTGCCC
TTTCATTTTTATCACAAATATATTTATTTAAAAA
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTGGTAAATGTTCACATATTGGAT
CATCCCTCTATCCCTGTGATGAAACCTCTGCTTGCTCATTTTCAATGATC
TTTTGGATTCATTTTGCAAGAATTTTATTGAGTATTTTTGCATCTATACT
TATTAGTGAAATTGGATTTAAGTTCTCTTGCTTTGATGTGTCTTCTGTGG
TTTAGGTATCTGTGAAACTGTTACTTCATAGAATGAATTAAATTAAATTC
CTTCTGTTTATTTATAGTTTGAGAAGTATTAGTATTAGGTCTCTTTGAAG
TACTGACTTTATTTTTCACCCCCCACCCGCACATTGTAAAATTATTTTAT
GCATTTATATTCAAATGATACCCCCTTTCCAGGTATACCACATAAGAACC
CCCCCAACCCAATCCCCTTCTTCTCCCACCCCCTTGCATCTGTGAAGTTG
CTACTCCACCCACCTACTCATCCGTGCCTCACTGCTCTGACATCCCCTAA
GGGGGAAAAAATCAAGCCTCCACAGGATGAAGGGCCTTTCCTCCCATTTA
TGTCACATAAGGCCATCCCCTGCTACATGTGTTTGAAACCAAGCATCCTT
CTGGGGGGTCAAGTGAGTTGATGTTTTTTATGCTACCGTGCTGGAAACCC
GTTTAATATCCTTTAGGACTTCCCTTATTCTTCCCGGGATTTCCTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_o17.b1 MSMg01no156_o17.b1 CHROMAT_FILE:
MSMg01no156_o17.b1 PHD_FILE: MSMg01no156_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:10 2005
         (314 letters)



>mm_chr19_13260349_13261063
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagcttgttctgtgtgaaaattctgtcctcttctcttgctttagacaagctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagcttgttctgtgtgaaaattctgtcctcttctcttgctttagacaagctgt 264

                                                                       
Query: 65  aaatattgactacttcctaagatcaaacttctggaagaagatttac-aaaaaaaaaaaaa 123
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 aaatattgactacttcctaagatcaaacttctggaagaagatttacaaaaaaaaaaaaaa 324

                                                                       
Query: 124 atcacattttatcacagatttttaagatgttaaagtgaccattctgtgtatagtattctc 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcacattttatcatagatttttaagatgttaaagtgaccattctgtgtatagtattctc 384

                                                                       
Query: 184 ttattaaaaattggctacttagatttcataatcatattagtgagaagtagaattcacttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttattaaaaattggctacttagatttcataatcatattagtgagaagtagaattcacttt 444

                                                                       
Query: 244 aaataaatgggacgtgtatacctactatgagttacttgaaaacagttgtttaataataat 303
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaataaatgggatgtgtatacctactatgagttacttgaaaacagttgtttaataataat 504

                      
Query: 304 tttgagggcta 314
           |||||||||||
Sbjct: 505 tttgagggcta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space:   215330
Effective search space used:   215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)