Query= MSMg01no157_d12.b1 MSMg01no157_d12.b1 CHROMAT_FILE:
MSMg01no157_d12.b1 PHD_FILE: MSMg01no157_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:31 2005
(313 letters)
>mm_chr19_56513008_56513720
Length = 713
Score = 526 bits (272), Expect = e-154
Identities = 305/328 (92%), Gaps = 19/328 (5%)
Strand = Plus / Plus
Query: 5 gaattcagccatcagcctggactaggtctaatgcccagtgcatttgctgggccagacgga 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcagccatcagcctggactaggtctaatgcccagtacatttgctgggccagacgga 264
Query: 65 gtggatcacagatgcggcagctgtcttgagtcaacagacatcgtttctgggccagctggt 124
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 gtggatcacagatgcggcagttgtcttgagtcaacagacatcgtttctgggccaactggt 324
Query: 125 ctcagaagaggactctcttcctgcttcataaatggctgccttcttcctctgtcctcacat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcagaagaggactctcttcctgcttcataaatggctgccttcttcctctgtcctcacat 384
Query: 185 ggcagagaaaacacaggaaaaaaaa-------------------atggaagagttctgac 225
||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 385 ggcagagaaaacacaggaaaaaaaacaaaacaaaacaaaacaaaacggaagagttctgac 444
Query: 226 atatcttctcataaagacactaatcctacaacgtcagggacccaccacccctctgacctc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatcttctcataaagacactaatcctacaacgtcagggacccaccacccctctgacctc 504
Query: 286 actaacttaactccttgaaggtcatact 313
||||||||||||||||||||||||||||
Sbjct: 505 actaacttaactccttgaaggtcatact 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_d12.g1 MSMg01no157_d12.g1 CHROMAT_FILE:
MSMg01no157_d12.g1 PHD_FILE: MSMg01no157_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:31 2005
(296 letters)
>mm_chr19_56646577_56647272
Length = 696
Score = 551 bits (285), Expect = e-161
Identities = 291/293 (99%), Gaps = 1/293 (0%)
Strand = Plus / Minus
Query: 1 aaggtgagtctgggacacagtgaggtccaggccagcctgagctagagacagactgtctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaggtgagtctgggacacagtgaggtccaggccagcctgagctagagacagactgtctaa 367
Query: 61 aaaccatcaagttaatgagtatgttaagagttggcagtattcttagaggcacacttgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaccatcaagttaatgagtatgttaagagttggcagtattcttagaggcacacttgaga 307
Query: 121 ataccatttgctgatggtttttgttaaaaaagaacattgttgggctgggtacagaggcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ataccatttgctgatggtttttgttaaaaaagaacattgttgggctgggtacagaggcac 247
Query: 181 atgcttttaatcccagttcaagaggcagaggcaggtctatctctgagttccagagcagcc 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atgcttttaatccc-gttcaagaggcagaggcaggtctatctctgagttccagagcagcc 188
Query: 241 tgagctacacaaagtgctataggacaaccagaagtatatgtaagatcctgtta 293
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 187 tgagctacacaaagtgctataggacaaccagaagtatatgtaagaccctgtta 135
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
