BAC Information

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BAC

Clone NameMSMg01-157L19
Chromosome19 (Build37)
Map Location 4,393,419 - 4,393,786
singlet/doubletsinglet
Overlap geneFbxl11
Upstream geneMtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1
Downstream geneLOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157L19.T7 (MSMg01no157_l19.b1)MSMg01-157L19.TJ (MSMg01no157_l19.g1)
ACCAG358137AG358138
length736735
length of high quality
(start - end)		679 (38 - 716)287 (68 - 354)
definitionCHROMAT_FILE: MSMg01no157_l19.b1 PHD_FILE: MSMg01no157_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:08 2005CHROMAT_FILE: MSMg01no157_l19.g1 PHD_FILE: MSMg01no157_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAG
ATCTAGAATATTGCTTAAGATTTTATGTGGTTTCATTTCTTTTAGTGAGA
AACATAGTTCTTGAACCCATTTTCTGATGATCTGATGATCTTCACTCTTA
GAGAAAAGGCTATAGATTTCTTTTATTTGCTTTTTTGAGATAGGTTCTCC
CACTTGTAGCCTTGAGTGGCCTGGAATTTGTGGCAGTCTCTCTGTCTCAA
ACTCATGAATGCTAGAATTACAGGTGTGAACTACTTTACTCGATTCCTCT
TGGCTTTTTCTTTTGTTAATGTGCTTGTTAAAGAGATCTGAAGTAGAAGA
TTGGAGAGATGGCTCAGCGGCTAAGAGTACTTGCTGCTCTTCCACAGGAC
TTGGTTCAATTCCCAGTATCACATGGAGGCTCACAGCTCTCTGTAACTCT
AATTCTAGAGACTCTAATATCTTCTTCTGACCTCCCGGGTACCAAACACA
TACATGGTGCCCAAACATACATGCAGGTAAAACTCACATAAAACAAGATA
TGTAATTCAAAAAAAAAGATTAATATGAATTGGCAAGTATATCTAACATG
CATGTGTTCTGTTAACCTTATTTTAGGGACTTGTTTTATATTTCTAAATT
CATATTAGCTTATAAGATTTTATCTCAGGACAGTGGTGCTGTACACCTTT
AATCTAGCATTTGCGGGGCTGAGATAGGCAGATCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTTTTGTTTCTTTTTTGCACACAAACAACACA
ACGAGTGACAGCAAACAATGTTCAGCCTCTTGGGGCCACCCTCTGAAAAG
TCTCCATAATTCCAAATGTCACACTATCGAGGGAACTGTCTGCGGCTGTC
GGGATCACACCCCTGCTAGAGCATGAGGCAAATCATAGTCGGCTGCTGCA
GACAGTCTGAAGCAGCCCCAGATTCCACACCTGGCATCAGGATGAAAACA
TATTCTTATAATACTTCTGGGTTTTTCAAAGAAACCAAAACCCCAAAACT
GTGATTTCTCNCTCCCCCACCCCCTCTTTTTTTCAAACAAAACATTTTTA
AAGATTAAAATGAGTAATCCCTACAAAATCCAGCCACACCGCTGTGCGTC
AGGCACTCTGTCACTGTGAGTTGGGGACCAGTGAGAGCAGAGCAGGGTTA
CAGGCTCAGGCCACACTGCCCCTCCCTGATAGCAGCTAGGGAGTGGATGT
GAGTAAGGCAGCGATGGCTCAGGAGTGAGATCTGGAGATAGAAGGAGGGG
CTTGAACTTCACCAACCAGTTAGCCAGAGAAGAGTAAGGCTTTTGTTACC
CAGGCCTAGTCAGGAATGAAGGAATAGCTGATGACTGTCCCACGGCCACA
GGCCATAGGCCTGGGGCAGAGGCAGGTCACAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_l19.b1 MSMg01no157_l19.b1 CHROMAT_FILE:
MSMg01no157_l19.b1 PHD_FILE: MSMg01no157_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:08 2005
         (679 letters)



>mm_chr19_4392708_4393786
          Length = 1079

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%)
 Strand = Plus / Minus

                                                                        
Query: 312  gattggagagatggctcagcggctaagagtacttgctgctcttccacaggacttggttca 371
            ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 1079 gattggagagatggctcagtggttaagagtacttgctgctcttccacaggacttggttca 1020

                                                                        
Query: 372  attcccagtatcacatggaggctcacagctctctgtaactctaattctagagactctaat 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 attcccagtatcacatggaggctcacagctctctgtaactctaattctagagactctaat 960

                                                                        
Query: 432  atcttcttctgacctcccgggtaccaaacacatacatggtgcccaaacatacatgcaggt 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  atcttcttctgacctcccgggtaccaaacacatacatggtgcccaaacatacatgcaggt 900

                                                                        
Query: 492  aaaactcacataaaacaagatatgtaattcaaaaaaaaagattaatatgaattggcaagt 551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899  aaaactcacataaaacaagatatgtaattcaaaaaaaaagattaatatgaattggcaagt 840

                                                                        
Query: 552  atatctaacatgcatgtgttctgttaaccttattttagggacttgttttatatttctaaa 611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839  atatctaacatgcatgtgttctgttaaccttattttagggacttgttttatatttctaaa 780

                                                                        
Query: 612  ttcatattagcttataagattttatctcaggacagtggtgctgtacacctttaatctagc 671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779  ttcatattagcttataagattttatctcaggacagtggtgctgtacacctttaatctagc 720

                    
Query: 672  atttgcgg 679
            ||||||||
Sbjct: 719  atttgcgg 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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