BAC Information

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BAC

Clone NameMSMg01-158D12
Chromosome19 (Build37)
Map Location 52,363,049 - 52,363,329
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
Downstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158D12.T7 (MSMg01no158_d12.b1)MSMg01-158D12.TJ (MSMg01no158_d12.g1)
ACCAG358494AG358495
length731731
length of high quality
(start - end)
313 (46 - 358)281 (76 - 356)
definitionCHROMAT_FILE: MSMg01no158_d12.b1 PHD_FILE: MSMg01no158_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:43 2005CHROMAT_FILE: MSMg01no158_d12.g1 PHD_FILE: MSMg01no158_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGTGCCCCATTTTTAATGGTGTTATTTGATTTT
CTGGAGTCCAGCTTCTTGAGTTGTTTGTATATATTAGATATTAGTCCCCT
ATCAGATTTAGGGTTGTTAAAGATCCTTTCCTTATCTGTTGATTGCTAGT
TTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATG
AGGTCCTATTTGTTGATTCTCAATCTTACAGCACAAGCCATTCTTGTTTT
GTTCAAGAATTTTTCCCATGTGCCCATATCTTCAAGGCTTTTCTCTACTT
TCTCCTTTATAAATTCCACCCGCTTCTGGATTTATGTGGAGTCCCTTGAT
CCACTTAGACCCGAGCTTTGTACAAGGAGATAAGAATGTATCAATTCACA
TTCTTCTACATGATAACCTCCAGTTGAGCAAGCACCATTTGTTGAAAATG
CTGTCTTATTTTTCCCACTGGATGGTTTTAGCTCCTTTGTCAAAGATCAA
GTGACCATAGATATGTGGTTTCATTTCTGGGTCTTCAATTCTATTGCAAT
GATCTGTCTGTCTGTCGCTGTACCAGTACCATGCAGTGTTTTTTTATTAG
GTATTTTCTTCATTTACATTTCCAGTGCTATCCCAAAAGTCACCCATACC
CTCCCCTCCCACTCCCCTAACCACCCACTCC
CCTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCAATAGTGAAGAGAAACACG
TGTGAACATATTTGTTCCCTTGCCTGATTTTCAAGTATTCATGGATGGGA
TTGGTCAAGTACTGTAAGAGTACAGATAGGCATCAGCTTGTTGCTGGCCT
TTGAGGCAATCATACAGTTCAAAGTGAAGCAAAGATTAACTGCCTGCCAG
TAGGCAATGTGTCAAGTGTATTTACTGAATTTAAATTATTTTATTGTCAA
AAAAGACCTTATAATCTTATTATTTTAACACATATGGAAACAACACATCA
GCACTATTTATAAGAACCCTGCGCCAGATGTATTAGGTGGGCCTGGGCAC
AACAGGATTTCCCTATGTAACAATTAAAGAGGGACCATGAGTTTGAAAGA
GAGTAAGGGGAGTTGGATGAAGAAAGGACAGTTTGGAAATGATGTAATTA
TATTACTATTTCAAATACTAGTTAGGTAAGAAAAGAAATCATAGCTCAAT
GCATTTGCTTTAGATGCCTGAGTTACAATAGGGATGTTGCTGTCTTTATT
CAACCCCACCCTCTCTGCTCGAGTCATTGGTGCCATCCCTTCATAATGAC
ACCATCTAAGGACACATGCAATGGTAGACTCCAAGAGCATTCTGAACTAG
CTTCCACAGTAGCATTTTACTGGATTATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_d12.g1 MSMg01no158_d12.g1 CHROMAT_FILE:
MSMg01no158_d12.g1 PHD_FILE: MSMg01no158_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:43 2005
         (281 letters)



>mm_chr19_52362849_52363529
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcccaatagtgaagagaaacacgtgtgaacatatttgttcccttgcctgattttcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcccaatagtgaagagaaacacgtgtgaacatatttgttcccttgcctgattttcaag 260

                                                                       
Query: 61  tattcatggatgggattggtcaagtactgtaagagtacagataggcatcagcttgttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattcatggatgggattggtcaagtactgtaagagtacagataggcatcagcttgttgct 320

                                                                       
Query: 121 ggcctttgaggcaatcatacagttcaaagtgaagcaaagattaactgcctgccagtaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcctttgaggcaatcatacagttcaaagtgaagcaaagattaactgcctgccagtaggc 380

                                                                       
Query: 181 aatgtgtcaagtgtatttactgaatttaaattattttattgtcaaaaaagaccttataat 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtgtcaagtgcatttactgaatttaaattattttattgtcaaaaaagaccttataat 440

                                                    
Query: 241 cttattattttaacacatatggaaacaacacatcagcacta 281
           |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 cttattattttaacacatatggaaacgacacatcagcacta 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)