BAC Information

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BAC

Clone NameMSMg01-158J23
Chromosome19 (Build37)
Map Location 18,631,715 - 18,631,998
singlet/doubletsinglet
Overlap genenone
Upstream genePcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158J23.T7 (MSMg01no158_j23.b1)MSMg01-158J23.TJ (MSMg01no158_j23.g1)
ACCAG358787AG358788
length852733
length of high quality
(start - end)
---287 (72 - 358)
definitionCHROMAT_FILE: MSMg01no158_j23.b1 PHD_FILE: MSMg01no158_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:10 2005CHROMAT_FILE: MSMg01no158_j23.g1 PHD_FILE: MSMg01no158_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCAGCTAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAGTCCCAGCAGGTTTGTAGAATAATTGCTGGCATCGCTCT
TACTCACCTTTCTGCTTCGAATGTTTCAGGGCGATGAGGCAACGTTGCTT
GGGCTTATAATTACAAAAGAATCTGGTGGCAAGAATGGCAGTTGTAAACG
TTGTATCCCACATAGTCACAGTCCCCTTTTAGACACAACACCCGATCCTT
GACCATGTGACCTTTATGCGCGTGCGCGTCTGTGTGCCCGTGTGCCTGTC
TCTCTCTCTCCCCCTCTCCCTCTCACTGTGTTTTTTTCCTCCGCGTCCTC
GTGCAGCCCACCCCACCCCCTTTTTGNGTGGTTTTTCCAAACAGCCCCCC
TGCTTTTTTATTTTTGTTGGGTTTTTTCTTCCCCCCCCCCTCTTCAAAAA
CCCACCAAAAAACCTTGGGGGGGGGCGGGCTTATTTTCCCTCCCTTCCCC
TTTATCCCCTCCCTCCCCTCTTTTCCTCCCTCCTCTCCTTTTCCCCTTCC
TCTTTCCCCCCCTTTCCCCTTTTCTCCCCCTTTTTTCTCTTTTTTTTCCC
TTATTATTCCCTCCCCTCTATAACCCTTTACCCTCCTCCCCGTACATTAC
TCTCCGCCCTTCGTTTTCTCCTCGCCTCCCCTCCCTTTTATCCTTCTCCT
CCGCCTTCCCCCTCCCTTTTCTCCGTTCCCCCTTTTCCCTCCCCCCTCTC
TTTCCCCCCTCCTTTTTCCCCCCCCCTTTTCTCCCCCCTCCTCCCCTCCT
CATATTCCGCATCCCCCTTCTTCTCTCCCCCCTTTTTCTCCCCCCCGTCT
CN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCAGCTCCACCCCCAAGTTTCTCAGAT
CTATGTACTGTGCCAGGTTAAATAGTGACTTCCCATGTCAGTCAGCTTTC
TGTCTATAAAGAACCTGATATGAGTGATTTAGAAGAGAAAAGGTTTGTCA
GAGCTCAGGTCAGGTGGTTTTAGTGGTGAATTTTGCTTTGGGCCTCTGCT
GGGTCTAACAGGCAGATAGCAGTGATGGAAAGTATATGAGAAACTTATTA
CCTTATTGCCAGGTGGTGTATGTGGTAAACACACATGGTCTGTCCTATAC
TTGAGTCTTTTCTAATCCCACCTGCTGCCGACACCTTGGGGGGGGGGGTC
ATACTTTGAAAAGAACTGCTCTACAAAACCTCATCTATATATTCTAGATA
AACTTTAGGGAAAGAGAAGCTTGTTGGACTTGAAAGTGATTGGTGGCATC
TACAGAAAACATGCTGATTGCTAGCCAGCATTCTGCATGGCCAAGACATT
TATGCTGTCTGGAAAAGGTCACATCTGAATTGGAACTAAGAACTTGAAGG
CATTTATTTTTCTCTGTGTGTAAAACTACCCAGCCTTTCTCTTCTAATCA
TGATTAATTAGAGTGTTCAGCATCCATGGGCTCTTGCTTTTGTCACACTT
GTCACAAATCAGTTTGTTCAAAGAGTTTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_j23.g1 MSMg01no158_j23.g1 CHROMAT_FILE:
MSMg01no158_j23.g1 PHD_FILE: MSMg01no158_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:10 2005
         (287 letters)



>mm_chr19_18631515_18632199
          Length = 685

 Score =  480 bits (248), Expect = e-140
 Identities = 277/288 (96%), Gaps = 6/288 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagctccaccccca-agtttctcagatctatgtactgtgccaggttaaatagtgact 59
           ||||||| ||||||||| |   ||||||||||||||||||||||||||||||| ||||||
Sbjct: 484 cttcagccccacccccaga---tctcagatctatgtactgtgccaggttaaatggtgact 428

                                                                       
Query: 60  tcccatgtcagtcagc-tttctgtctataaagaacctgatatgagtgatttagaagagaa 118
           |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tcccatgtcagtca-catttccgtctataaagaacctgatatgagtgatttagaagagaa 369

                                                                       
Query: 119 aaggtttgtcagagctcaggtcaggtggttttagtggtgaattttgctttgggcctctgc 178
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 368 aaggtttgtcagagctcaggtcaggtggttttagtgatgaattttgctttgggcctctgc 309

                                                                       
Query: 179 tgggtctaacaggcagatagcagtgatggaaagtatatgagaaacttattaccttattgc 238
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgggtctaacaggtagatagcagtgatggaaagtatatgagaaacttattaccttattgc 249

                                                           
Query: 239 caggtggtgtatgtggtaaacacacatggtctgtcctatacttgagtc 286
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 caggtggtgtatgtggtaaacacacatggtctgtcctatacttgagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 685
Length adjustment: 9
Effective length of query: 278
Effective length of database: 676
Effective search space:   187928
Effective search space used:   187928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)