Query= MSMg01no159_d06.b1 MSMg01no159_d06.b1 CHROMAT_FILE:
MSMg01no159_d06.b1 PHD_FILE: MSMg01no159_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:53 2005
(314 letters)
>mm_chr19_46900396_46901109
Length = 714
Score = 445 bits (230), Expect = e-129
Identities = 287/328 (87%), Gaps = 38/328 (11%)
Strand = Plus / Minus
Query: 5 gaattcagagatcttgcctctgcctctctgcctctctgcctctctgcctctgcctcctga 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 504 gaattcagagatcttgc--------ctctgcctctctgcctctctgcctctgcctcctga 453
Query: 65 aagctgagaataaagatatatactatcacacccagtatgacattgtatcttacaattgct 124
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 452 aagctgagaataaagatatatactatcacacccagtgtgatattgtatcttacaattgct 393
Query: 125 tagtctgttctatgcttagatacatgaccttactcactgagcattgactagaacatagta 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tagtctgttctgtgcttagatacatgaccttactcactgagcattgactagaacatagta 333
Query: 185 ggagcttgctccagccttatgaatgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgc 244
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 332 ggagcttgctccagccttatgaatgca----------tgtgtgtgtgtgtgtgtgtgtgc 283
Query: 245 gcgcgcgcgcaca--tgc----g--------------cccctttacaatttttattttgg 284
||||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 282 gcgcgcgcgcacatgtgcatgtgcacacacacacacacccctttacaatttttattttgg 223
Query: 285 ctcatggttgtggaagtttcttgctatg 312
||||||||||||||||||||||||||||
Sbjct: 222 ctcatggttgtggaagtttcttgctatg 195
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_d06.g1 MSMg01no159_d06.g1 CHROMAT_FILE:
MSMg01no159_d06.g1 PHD_FILE: MSMg01no159_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:53 2005
(288 letters)
>mm_chr19_46746861_46747548
Length = 688
Score = 547 bits (283), Expect = e-160
Identities = 286/287 (99%)
Strand = Plus / Plus
Query: 1 tttccccttcttcacgagcacttctctggccagctgatagtgaccgacaatcactgcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccccttcttcacgagcacttctctggccagctgatagtgaccgacaatcactgcagt 260
Query: 61 tgtggtacccaggcgaagagaatagatgggaccatacttttcctgcagcttgaagaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggtacccaggcgaagagaatagatgggaccatacttttcctgcagcttgaagaagtt 320
Query: 121 ggcatgcatatgaccacgtctggggagaaacggtagactacccaccaggggcaggaatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcatgcatatgaccacgtctggggagaaacggtagactacccaccaggggcaggaatgg 380
Query: 181 aaggctcctggggaacttggcattaggtgtctttgacttgggccaaaagaaataggccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggctcctggggaacttggcattaggtgtctttgacttgggccaaaagaaataggccag 440
Query: 241 gatgagcagcaagagacccacaagctcccacatggcagccaggtgta 287
|||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 gatgagcagcaagagacccacaagttcccacatggcagccaggtgta 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
