BAC Information

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BAC

Clone NameMSMg01-159D17
Chromosome19 (Build37)
Map Location 52,375,179 - 52,513,701
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
Downstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159D17.T7 (MSMg01no159_d17.b1)MSMg01-159D17.TJ (MSMg01no159_d17.g1)
ACCAG359231AG359232
length750751
length of high quality
(start - end)		319 (42 - 360)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no159_d17.b1 PHD_FILE: MSMg01no159_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:55 2005CHROMAT_FILE: MSMg01no159_d17.g1 PHD_FILE: MSMg01no159_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,375,179 - 52,375,492)(52,513,412 - 52,513,701)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTTATTTCAATTTTTAACATATAATAAATATGCAATAAATATTTCAG
CATGATTTCAATTTTATAGCAAAATAAAATTTAAAACATAAAGCACAATT
AATTCATTGCAAATCCTAAGGTCTCAACCAATTCAATTCACAAGAGCCAT
AGGAACCTACATTTCGAGATGCATTTTATACCTGGGAAATGAATCCGAAT
TTAAGATTGTAGCATTTATGTAATAGTTCTTCCGCATCTACTCATTTCTA
CTAGCTATCAGGATTGATTATCCTAAAAAGGCTCATGTATGCTGTATGAG
AAACAGCATGTTTAATGAAAACACTCGGCCAATGTTTGCTGATACATTGT
CCATATTACACAAACCCTTAAGTGGGAATTTCATCTCCAGTAGCCACTTA
TGTTTATGATTTGCGTGGAACCCCTGATGAGCTGAGACACTCCTAGGAAA
ACATGATCTTCACTCAAGCATATGTCTCTCCCAATCTTTCATCTGCTTCC
TGAAATAAGATGCTGTCCAAACAAATAATCACTATGCTAAGATGGTGATT
TGGACACTAATTACATGGAAAAGCTTCTGCTCTATAATTAAATAGATGCT
CTTTATTTATCTATCACATGAGTTCAGAGATAGCTGGGAGAAAATGCCAA
TTTCTGAGTCAAGGCACTACAAAATTTCAGTGTAAAATCTGTTTCCTACA


ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTAGGGATGTTGTGTTTTCACATAAGGG
GAAGGCAGTAGTACAATGTATATTGGTGCACAGTCTCCTTGATAAGGACT
TTGTAAGGACAGAGAAATTCTATTGGCTTAATCAGGTCTATTGGGGCCTC
TCCTTCTCTTAATGCCATCATATTGAGAACACTTGAATTTTGGAGGAGAC
ACATTCCTCGTGCCCCTTCCCCAAATGGGCTTACAGAACATAAAAAGTAA
TGACGTCTGTTTAATACATGAGATAGCTGTCATTTGTGAAAGTCTTTTAT
TTCTACCTTCTTTATGTCCGCTGCCCAGTCACTTGGACTGGATAAATCAC
AAATTACTCCTACAGGATCTTCTGACTCCTCAGCTTCTTTCAGCTTTCCC
TAATTTAACAACAGGGGTCAGCTGCTTCTGTCCATTGGTTGGGTGCAATC
CACAGATCCAAAGAAGTTAAGTAACAGGAGGACCCAAGGAATGATGCTTG
AATATCCCCCAAAAGGGAAATAAAATAGACATGAAGTGTGGATGGAAAGA
GAGAACTGGGTGTGAGATAGAGTGAGGAGGGGAACAAAAGAAGTAGGAAT
CAGGTGTGGAGAAATCAGGGCCAGGGGTTGAGAGGGATTATAGAGAGAAG
GGAAATAGATGTGGATTGATCTACTCTGTAAGATCTATCCTTGGTGGGTG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_d17.b1 MSMg01no159_d17.b1 CHROMAT_FILE:
MSMg01no159_d17.b1 PHD_FILE: MSMg01no159_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:55 2005
         (319 letters)



>mm_chr19_52374974_52375692
          Length = 719

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctttttatttcaatttttaacatataataaatatgcaataaatatttcagcatgat 65
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 206 aattctttttatttcaatttttaacatataataaatatgcaatacatatttcagcatgat 265

                                                                       
Query: 66  ttcaattttatagcaaaataaaatttaaaacataaagcacaattaattcattgcaaatcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttcaattttatagcaaaataaaatttaaaacataaagcacaattaattcattgcaaatcc 325

                                                                       
Query: 126 taaggtctcaaccaattcaattcacaagagccataggaacctacatttcgagatgcattt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taaggtctcaaccaattcaattcacaagagccataggaacctacatttcgagatgcattt 385

                                                                       
Query: 186 tatacctgggaaatgaatccgaatttaagattgtagcatttatgtaatagttcttccgca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatacctgggaaatgaatccgaatttaagattgtagcatttatgtaatagttcttccgca 445

                                                                       
Query: 246 tctactcatttctactagctatcaggattgattatcctaaaaaggctcatgtatgctgta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctactcatttctactagctatcaggattgattatcctaaaaaggctcatgtatgctgta 505

                         
Query: 306 tgagaaacagcatg 319
           ||| ||||||||||
Sbjct: 506 tgaaaaacagcatg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no159_d17.g1 MSMg01no159_d17.g1 CHROMAT_FILE:
MSMg01no159_d17.g1 PHD_FILE: MSMg01no159_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:55 2005
         (290 letters)



>mm_chr19_52513028_52513717
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtagggatgttgtgttttcacataaggggaaggcagtagtacaatgtatattggtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tctgtagggatgttgtgttttcacataaggggaaggcagtagtacaatgtatattggtgc 615

                                                                       
Query: 61  acagtctccttgataaggactttgtaaggacagagaaattctattggcttaatcaggtct 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 acagtctccttgacaaggactttgtaaggacagagaaattctattggcttaatcaggtct 555

                                                                       
Query: 121 attggggcctctccttctcttaatgccatcatattgagaacacttgaattttggaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attggggcctctccttctcttaatgccatcatattgagaacacttgaattttggaggaga 495

                                                                       
Query: 181 cacattcctcgtgccccttccccaaatgggcttacagaacataaaaagtaatgacgtctg 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 494 cacattcctcgtgccccttccccaaatgggcttacggaacataaaaagtaatgacgtctg 435

                                                             
Query: 241 tttaatacatgagatagctgtcatttgtgaaagtcttttatttctacctt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tttaatacatgagatagctgtcatttgtgaaagtcttttatttctacctt 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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