Query= MSMg01no159_i23.b1 MSMg01no159_i23.b1 CHROMAT_FILE:
MSMg01no159_i23.b1 PHD_FILE: MSMg01no159_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:18 2005
(193 letters)
>mm_chr19_41915959_41916547
Length = 589
Score = 315 bits (163), Expect = 9e-91
Identities = 180/187 (96%), Gaps = 5/187 (2%)
Strand = Plus / Plus
Query: 5 gaattcaggtcaggttccaagcaacccgtaaagaccatgaccaacctgggggaagacatc 64
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtcaggacccaagcaacc-gtaaagaccatgaccaacctgggggaagacatc 263
Query: 65 actcgagcagaagggacttcccccttagcctaagtccatgtaggctcttttttttttatt 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 actcgagcagaagggacttcccccttagcctaagtccatgtaggctcttttttt---att 320
Query: 125 tttaagaattttttgcttgtttgtttgtttgtttgtttgggttttttttgttgttgttgt 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tttaagaattttttgcttgtttgtttgtttgtttgtttgggttttttt-gttgttgttgt 379
Query: 185 tgttttc 191
|||||||
Sbjct: 380 tgttttc 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 589
Length adjustment: 8
Effective length of query: 185
Effective length of database: 581
Effective search space: 107485
Effective search space used: 107485
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no159_i23.g1 MSMg01no159_i23.g1 CHROMAT_FILE:
MSMg01no159_i23.g1 PHD_FILE: MSMg01no159_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:19 2005
(287 letters)
>mm_chr19_42069314_42070000
Length = 687
Score = 536 bits (277), Expect = e-157
Identities = 277/277 (100%)
Strand = Plus / Minus
Query: 1 agaggacagaaagtagacagaagttggccttgggcataaactggctgtgcagagcactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agaggacagaaagtagacagaagttggccttgggcataaactggctgtgcagagcactgt 418
Query: 61 aggctccctcgggcactgcctcccctaggtcccctgggaatcctggtgcggtgaactatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aggctccctcgggcactgcctcccctaggtcccctgggaatcctggtgcggtgaactatg 358
Query: 121 gatgtgcctggaggagtaggtgtggggaggagaaagctgacttagaaaaacaaatcacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gatgtgcctggaggagtaggtgtggggaggagaaagctgacttagaaaaacaaatcacag 298
Query: 181 agactcagcaccattcaggctatcacactgtgcgctccctgtggagttggaacagaccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agactcagcaccattcaggctatcacactgtgcgctccctgtggagttggaacagaccct 238
Query: 241 ttgtgtcagtgcttctcacatctcgcaagagtagcgg 277
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttgtgtcagtgcttctcacatctcgcaagagtagcgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
