Query= MSMg01no160_n11.b1 MSMg01no160_n11.b1 CHROMAT_FILE:
MSMg01no160_n11.b1 PHD_FILE: MSMg01no160_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:55 2005
(256 letters)
>mm_chr19_3523316_3523972
Length = 657
Score = 449 bits (232), Expect = e-131
Identities = 244/250 (97%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 5 gaattccagagctgcaaatgtaaccactgtgtatttctgtccctagccagtggttacagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaattccagagctgcaaatgtaaccactgtgtatttctgtccctagccagtggttacagt 385
Query: 65 agagaagtctgctgtggcattgatgaatggctgttttacaggataggggagactaatgga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agagaagtctgctgtggcattgatgaatggctgttttacaggataggggagactaatgga 325
Query: 125 acagaaccttccagaagacagctgttgggtagtgctgtgtagtgcatgcctacatacctg 184
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 324 acagaaccttccagaagacagctgttgggtagtactgggtagtgcatgcctacatacctg 265
Query: 185 cagttctgctttcttttctgtcttcctcctgcatcagtttttgtttgtttgtttggtttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 264 cagttctgctttcttttctgtcttcctcctgcatcagtttttgtttgtttg----gtttg 209
Query: 245 gttttttttt 254
||||||||||
Sbjct: 208 gttttttttt 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 657
Length adjustment: 9
Effective length of query: 247
Effective length of database: 648
Effective search space: 160056
Effective search space used: 160056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no160_n11.g1 MSMg01no160_n11.g1 CHROMAT_FILE:
MSMg01no160_n11.g1 PHD_FILE: MSMg01no160_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:55 2005
(263 letters)
>mm_chr19_3418848_3419511
Length = 664
Score = 449 bits (232), Expect = e-130
Identities = 256/264 (96%), Gaps = 1/264 (0%)
Strand = Plus / Plus
Query: 1 tgtccttaagaagctttcgaagatggttccccactcctacccaatattaaaggcctagag 60
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 201 tgtccttaggaagctttcgaagatggttccctactcctacccaatattaaaggcctaggg 260
Query: 61 gcacccagccacggcagggctttgtggtgaggtccttcatgtggccttggataggcacca 120
||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 261 gcacccagccacggcagggctttgtggtgcggtccttcgtgtggctttggataggcacca 320
Query: 121 tggctctgaggctggaagaagagagacaggggacatgggaggacctgtgacctgcttcgg 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctctgaggctggaagaagagaaacaggggacatgggaggacctgtgacctgcttcgg 380
Query: 181 gtggggctttaagtgtttcctaggccagggcagcactcctttctgtgaacccc-tccctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 gtggggctttaagtgtttcctaggccagggcagcactcctttctgtgaaccccctccctg 440
Query: 240 caacttgcccacaggccttcccat 263
||||||||||||||||||||||||
Sbjct: 441 caacttgcccacaggccttcccat 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 664
Length adjustment: 9
Effective length of query: 254
Effective length of database: 655
Effective search space: 166370
Effective search space used: 166370
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
