BAC Information

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BAC

Clone NameMSMg01-161E01
Chromosome19 (Build37)
Map Location 34,598,296 - 34,598,579
singlet/doubletsinglet
Overlap geneLipa
Upstream geneAI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h
Downstream geneIfit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464, LOC100042292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161E01.T7 (MSMg01no161_e01.b1)MSMg01-161E01.TJ (MSMg01no161_e01.g1)
ACCAG360705AG360706
length1,1321,205
length of high quality
(start - end)
285 (506 - 790)339 (508 - 846)
definitionCHROMAT_FILE: MSMg01no161_e01.b1 PHD_FILE: MSMg01no161_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:39 2005CHROMAT_FILE: MSMg01no161_e01.g1 PHD_FILE: MSMg01no161_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGTCAGTGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTCACCAACTCAGATGACGCATTGACTTCCAAAAGTTGTTACGCCTA
GCCCCAGAAAACCTCCATACCTTTGCCAAAATGGTTCTTCCGCCCATGAG
GGATTCGGTGAATACTCAGAATATAGCCATCTCCTCCCAGGACCGAGTGT
TCCTCACCAGGATATCCCCAGCGCATGATTATCTCGGTCTGGGGAGAAAA
AGAACAATGGGTATTCTATGGTGGACTCTGAGTCTTCCATCTCCAAAAAT
ATCAGGCAGAAAACAAAGCTTTATTCTGCTCCATCTAGTAACCAAAATTC
CATCTCAAGACCCAGTCAGTTATACTCGCAGGCATCTCATCATTCCGCCA
GCTCTGTTTCTGAGTGTATCAAATTTGGGCTCTTGTCGTTTTCTTTCCTG
CCGACCATTTTTTTCCCCCCCCTTCTTTTCTAAATATGTCAGCTAACATT
ATTCATGTTCCAAAGTTCCTGACCTAGGCAATAAGGCTAAACAAAATGTC
ATTTGAAAGGCATGAAACTGATAGAAGAAAAGCCGAAAAATGAGAAACTG
CCATTAATTTTACCTCCCCACAGGGAAAGAGTCATGAGTGGCAGGTGGGA
AGGCATCCACCAATTACATGGAAGATCAAAGTGTTCGTTATCCTCTCTGC
CATAAATACCTGAAAGACTTGAATTCCATCATTCCCTTAGGAAGGATGCC
ATGGCCTGTGTCAGTCCATCCTGTCCTATCTAGGAATTTGTCACTCTCTG
CAGTCACCTGTTTCTTTAGCTGGTCAATCCATCTTCTGTCTTAAAGCTAC
TGTGTCTTTAATAAACTATATTTTCTATTCAATTCTTCCACCTTGTTTTA
TCTAAAAATTCCCTGTTTTCTTTAAAATCTATAAATTTTTGAAAGGTTTT
AATTAATTTTTATGGGGATTTTTTTTTTTTTGTTTTGGCATCTATATTTT
ATTCTAACTATTTTTCTTTTTATCTCATCCTTTTTCTTACTTATTTTTTT
TTTTTTTTCTTATTTTTTATTATTTTCGTAATTATTTCATTTATTTATTT
ATCTTCTTTTTCTTTTTCCATTAGTACCTTAT
NNAAAACAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATGAAAATGCATGCACAACTTACCCAAACT
TATGGGACATAATGCAAGTAGTGCTAAGAGCAAAGTTCATAGCACTAAGT
GCCTTCATAAAGAAATTACTAAGATCCTATATTACTGACTTAACAACATG
TCTGAAAGCTCTAGAACAAAAAGAAGCAAACACATTCAAGAGGAGTTGAT
GGCAGGAAATAATGAAACTCAGGGCTGAAATTGATAAGATAGGAGCAAAG
AAAACAATACAAAAAATCAAGGAAACAAAAAGCTGGTTCTTTGAAAAAAA
TCAACAAATAGACAAACCCTTAACCAAGCTAAAAGGCAAAGAAAGAATAT
TCATATTATCAAAGTCAGAACTAAAAAGACACCGAGGAAATCCAAAGAGT
CATTATTTTTTTTTCCCCCCCCCCTGTACTTCACAAATTGTAAAATAAAA
AAGAAATAGATAATTTTCTTGATAGATCATGATCAGATAAACAGCCCAAT
AGGCCTATAATCCCTAAGAAAATAGAAGCAGACATTAAAAGTCTCAACCA
AAAAAGGCGAAGGGCCAGATGGTTTTGTCACAGAATTCTACCAGATTTTC
AAAGAAGAGATAATACAAATACTCCTCAAATTATTCCAAAAAAATAGAAA
TAGAAGGAACATTGCCAAATGCATTTTATTAGGCCATAATCACTTTAATA
CCAAAGACTCAAGAAAGAAAGAAAAAAAAAGTTTCAGACCAATTTCCCTC
AAGAACATGAATGCAAAAATACTCAGTAAAATACTCCCAAACTGAATCCA
AGAACACACTAAAAAGATTGTCCATCATGATCAAGTAGGATTCATCCTAG
TGATGCAGGGATGGTTCAACATGAAAACCCTTCCATGCAATCCCTTGTAT
GAATAAACTTGGAAGAAACCAAACCCCTAATCCCCCTATTTAGAGGTTGG
AAAAAGCCTTTCAAAAAAATCCCACCACCCTTGGGGGAATAAAATCTTGG
AAAAAAAAAAGGGTTTTATAACCCCTATCCCACACAAATATAGGGCATTA
TATTCGCCAGGCTGAAATTCATGCATCCTTGTTATATGTGAGGAAAAACC
CACATCTCCCCTTTATGGGCCCTGGGGCTCTCTCCAATATGAATTTTCAG
GCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_e01.b1 MSMg01no161_e01.b1 CHROMAT_FILE:
MSMg01no161_e01.b1 PHD_FILE: MSMg01no161_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:39 2005
         (285 letters)



>mm_chr19_34598096_34598779
          Length = 684

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%), Gaps = 1/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttccaaagttcctgacctaggcaataaggctaaacaaaatgtcatttgaaaggcatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttccaaagttcctgacctaggcaataaggctaaacaaaatgtcatttgaaaggcatga 260

                                                                       
Query: 61  aactgatagaagaaaagccgaaaaatgagaaactgccattaattttacctccccacaggg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactaatagaagaaaagccgaaaaatgagaaactgccattaattttacctccccacaggg 320

                                                                       
Query: 121 aaagagtcatgagtggcaggtgggaaggcatccaccaattacatggaagatcaaagtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagtcatgagtggcaggtgggaaggcatccaccaattacatggaagatcaaagtgtt 380

                                                                       
Query: 181 cgttatcctctctgccataaatacctgaaagacttgaattccatcattcccttaggaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 cgttatcctctctgccataaatacctgaaagacttgaattccatcattcccttag-aagg 439

                                                        
Query: 241 atgccatggcctgtgtcagtccatcctgtcctatctaggaatttg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgccatggcctgtgtcagtccatcctgtcctatctaggaatttg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)