BAC Information

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BAC

Clone NameMSMg01-162D12
Chromosome19 (Build37)
Map Location 19,386,136 - 19,386,456
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
Downstream geneLOC100042218, LOC100041541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162D12.T7 (MSMg01no162_d12.b1)MSMg01-162D12.TJ (MSMg01no162_d12.g1)
ACCAG361411AG361412
length710709
length of high quality
(start - end)
321 (47 - 367)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no162_d12.b1 PHD_FILE: MSMg01no162_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:32 2005CHROMAT_FILE: MSMg01no162_d12.g1 PHD_FILE: MSMg01no162_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAACATGTAAATTTATAATCTTACATTGGAAAAAATTAAAATC
ATGGGCTGGAGAAGTTTGATACTTTGTATCATGTACCTGTTAGCCTTGCT
CTCTCATCTATACTATGAGTATTTCAAATCTCTGCTTGGTCCTTCAGATT
CATTCTGCAATTCTGTAGAGAGCTACACAAAGAACACTAAGCTTTGTAAT
CTTTTGGAAAGAAACCTCCAATGTTTCTTCGTGTCAACTATTCTTTATAT
CCTTCCTTAAGAAAGAAACATTCATTATATTTCAAGGTTAATGCCTTCTA
TAAGACAAAATCGTTTATTCTTCACGACGCCCCGCCTTTATAAGGAAAAG
TTCAAGGCATATTGTGAATGTCTACCTCTGGTTTATTCCTCTCATCAGAT
AAGTGAGTGGAAGTGTGAGGATCTCTAGCTGTGTAGATAGCTGTGTAGAT
AGCTGTGTAGGGGTGGCTTGATAGAAGAAAGCTCATACTTTCCCTTCATC
TCTTGAGTTCTCAGGAGAAACCTAGATAGAGAAATTATTGGTTGGATTAA
GTTTTAGGGAAGTGATAGCTTTCTCTTAGAATGCGAATGTTTGCTTTCTG
CAACCATTACAAAGGCAGTGCTTGTAGAATAATTGTCAGCTCTGAAGTTA
GTGCTGCTAA
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTTGAGTTGAAAAAGAACTCAC
CAGCATACTTGGTTGTGGAGAGCCGTGAGCAATTGCCATCATGAGCCTCC
GCTGTGCCTAACTGGTAAACAAGTAATGTGCACAGGTGCAAGAGTAAATT
CGTGCCAAGTCACTGCCCATCCTGGGGCGTAGTAGTGGGGTGATGAGTGA
GCAGCTAATCAGGAGCTGACACGTCACATGGAGGGGTACATAAGCAGCAT
CATTTTCCTTGTTCGTTGTTGTTCTTCTTTCACCTATGCAATCAATGCTC
TCCCAATAAACGTGTGTTTTATGGACCCCCGCCCCCCCGCCGTTCTTCCT
GGCCAGTTGAGCGCGTGCAAGACTTGCAATGTTAAATGGATTCTGGGATC
TGAAGTGTGATAATCCTGAATTGATTAGGAAGACTTGTTCACCTCTGAGC
TGTCTCTCCAGCTCGTAAGAAATGCTTTCAAATGAATGAGAGGTTATAAG
AATCCAGTCTCCATCATGTAAATGTACCACATTTTCTGTATCCATTCCTC
TGTTGAGGGACATCTGGGTTGTGTCCAACTTCTGGCTGTTATAAATAAGG
CTGCTATTAACATAGTGGAGCATGTGTCCTTATTACACGTTGGAGCATTT
TCTGGTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_d12.b1 MSMg01no162_d12.b1 CHROMAT_FILE:
MSMg01no162_d12.b1 PHD_FILE: MSMg01no162_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:32 2005
         (321 letters)



>mm_chr19_19385932_19386658
          Length = 727

 Score =  536 bits (277), Expect = e-157
 Identities = 308/321 (95%), Gaps = 6/321 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaacatgtaaatttataatcttacattggaaaaaattaaaatcatgggctgga 64
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatcatgtaaatttataatcttacattggaaaaaattaaaatcatgggctgga 264

                                                                       
Query: 65  gaagtttgatactttgtatcatgtacctgttagccttgctctctcatctatactatgagt 124
            ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 265 aaagtttgatactttgtatcatgtacttgttagtcttgctctctcatctatactatgagt 324

                                                                       
Query: 125 atttcaaatctctgcttggtccttcagattcattctgcaattctgtagagagctacacaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 atttcaaatctctgcttggtccttcagattcattctgcaattctgtagagagatacacaa 384

                                                                       
Query: 185 agaacactaagctttgtaatcttttggaaagaaacctccaatgtttcttcgtgtcaacta 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 agaacactaagctttgtaatcttttggaaagaaaccttcaatgtttcttcgtgtcaacta 444

                                                                       
Query: 245 ttcttt---atatccttccttaagaaagaaacattcattat---atttcaaggttaatgc 298
           ||||||   ||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 445 ttcttttttatatccttccttaagaaagaaacattcattatcatatttcaaggttaatgc 504

                                
Query: 299 cttctataagacaaaatcgtt 319
           ||||||||||||||| |||||
Sbjct: 505 cttctataagacaaactcgtt 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 727
Length adjustment: 9
Effective length of query: 312
Effective length of database: 718
Effective search space:   224016
Effective search space used:   224016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)