BAC Information

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BAC

Clone NameMSMg01-162G21
Chromosome19 (Build37)
Map Location 29,786,831 - 29,787,132
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana
Downstream gene9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162G21.T7 (MSMg01no162_g21.b1)MSMg01-162G21.TJ (MSMg01no162_g21.g1)
ACCAG361559AG361560
length702691
length of high quality
(start - end)
306 (46 - 351)---
definitionCHROMAT_FILE: MSMg01no162_g21.b1 PHD_FILE: MSMg01no162_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:48 2005CHROMAT_FILE: MSMg01no162_g21.g1 PHD_FILE: MSMg01no162_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGCTTCCTGGACTGAAAGAACTGGTCTCAGGGAGGGGAGATCC
TTGTAGACACTGCGGGTAAGATTGGCTTACTTGCTGATGGAGAAAGTGTG
AACCTAGATCCCACTGCTAAGCACAGGGCTCCAGGCCTCCACTGCAGTGA
GCTCACTTATGGTCAGAGAAGGGTTCAGGGCACAGTGCTGCTCTGCTCTG
TTTTCTGGGAGCCAGGTGGGGACTCGAGTAATCAGAACTCACGACTAGTC
AAGTCTCCTCTGACTAGAAACAGCCTTTTCCAGTTAGCCAACTATACTGG
ACTTTTTATTCTACCCCNACCCCGCCCCGAGCTAACAAAGTCAGAGAACA
AGTTTATTGAACCACCTCACACTTTCTCCATTGCTAACACTGTGGTCTCG
AATTCAAGCCTCAAGCCTCTACAGATTCCCCATGGAGATTCTTGAAGTGG
AAACTTCTAGTTTCTTTGGAAAGTTAGTTATGTCAAATGTTGTTTTGCTG
GGGCCCACAGGTGAAAGGATGTTTGGTTATAGCAAACATGTGAAAGGACA
CTTGATGGAGTATAAATATGACCCCACAGACAGTGGGGGACAGCACAGAG
CATTGGTTTGCTTTGCTACATTTGCTATTCTTCCCTAACAACACACATGT
AT
ATGATAGGGGAGCCTGGGGGCGCCGGTTCCCACCCGANNGNGAANNANAG
AGTACCCGGAGAAGGGGGNNGAAAANGGGAGAGNNNAANAGAAANNNAAA
AGTTTTTCCCCANAGAAGAAGNGANNAAGGNNNAGGAAANAGGGGGGGNG
GGGGNANGGNANNANNNANGAGAAGGNNGGNNAGAGNAGAANNANNGGGG
GGNAGANNNNANAAGGNNNAAAGGAGNAGNANAAATTTTGTNTAGGGGGN
GAAATNATTAANTGGNATTAGNTAANNNTAGGNAGGANGGGAAAANAAAT
TTTTGGTGTTTTAAAAAGGAAAAAGAAAGAAAAAAAGAAGTTTTTTTTTT
TTTCCCCCCCCCCCCCCCCCAAGGNAANNNGNNNGNNGNGANNNNNNANN
NNCCAAAAANNCAGNNNNAAAANNGGGGGGGGGGGGCGNNGNGACANACA
NNCAGAANCNACACAAACNCCGGGGGGCAACAGACGGACAAAACCGCAGA
CACACAGCCCACCGGCACCCAGAGACCCGACCCACGAAGACCAAGGGACC
CCAAGGCACAGCGGAAGGAGGAAAGAGAGAGAGAACCAGAGACAGGGGAG
CCCGACAGAACCCCAGAAGAAAAGACTTTTTTTTTTTTTTCTGACCCAAC
AACGAGGGGACAAAACCACTATACAACGGCCCTGAAAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_g21.b1 MSMg01no162_g21.b1 CHROMAT_FILE:
MSMg01no162_g21.b1 PHD_FILE: MSMg01no162_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:48 2005
         (306 letters)



>mm_chr19_29786627_29787332
          Length = 706

 Score =  576 bits (298), Expect = e-169
 Identities = 301/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgcttcctggactgaaagaactggtctcagggaggggagatccttgtagaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgcttcctggactgaaagaactggtctcagggaggggagatccttgtagaca 264

                                                                       
Query: 65  ctgcgggtaagattggcttacttgctgatggagaaagtgtgaacctagatcccactgcta 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgcgggtaagactggcttacttgctgatggagaaagtgtgaacctagatcccactgcta 324

                                                                       
Query: 125 agcacagggctccaggcctccactgcagtgagctcacttatggtcagagaagggttcagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcacagggctccaggcctccactgcagtgagctcacttatggtcagagaagggttcagg 384

                                                                       
Query: 185 gcacagtgctgctctgctctgttttctgggagccaggtggggactcgagtaatcagaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcacagtgctgctctgctctgttttctgggagccaggtggggactcgagtaatcagaact 444

                                                                       
Query: 245 cacgactagtcaagtctcctctgactagaaacagccttttccagttagccaactatactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacgactagtcaagtctcctctgactagaaacagccttttccagttagccaactatactg 504

             
Query: 305 ga 306
           ||
Sbjct: 505 ga 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)