BAC Information

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BAC

Clone NameMSMg01-163I21
Chromosome19 (Build37)
Map Location 41,799,166 - 41,799,478
singlet/doubletsinglet
Overlap geneSlit1
Upstream geneEntpd1, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181
Downstream geneArhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163I21.T7 (MSMg01no163_i21.b1)MSMg01-163I21.TJ (MSMg01no163_i21.g1)
ACCAG362320AG362321
length727724
length of high quality
(start - end)
318 (44 - 361)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no163_i21.b1 PHD_FILE: MSMg01no163_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:10 2005CHROMAT_FILE: MSMg01no163_i21.g1 PHD_FILE: MSMg01no163_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTAAAAAGATTTAATTCTTCACCCAAATTGCTTCCAAGGTGCTGAA
AAAAAAATCTCATTCTACCTTCAAGAAACCCAAATTAAAAAAAAAAAATC
ACACAAGGTTTATGTGTGTGGTTTGAATGAATAAAGCCATAGAAAACGCC
AGTCACTATCTCATACCAAAAGGAATAGACAAATTCTTAGGGGTGAGGCT
GGGAAAGGGGCCAATAAATGTACATTTCCATTTTAAATGAAAACGCTATA
TTCACAGACTGAGTGTTTCTATTCTGACTCCCCACTCCCACCCGCTTTCA
CAAACAGATTCCCTTTGTCTCCCACCCACCGGAGCAGATATCTGGCCACT
GCACTGGCTGCTCACTGCGCATACCTGACACCCTGAGGTGACCCAGGCCA
GGGCTGAAAGCAAACAGAAGGGACAAGGTCTGCAGAGACAAGTCCGTGAC
TGGGAAAGGAAGCCCCTGCCAGGCCTCAGGTGGCAGCTGCGGGTACCACA
GGCCATGCCTCCTCAAGCCTAGACCCCTCCCACCTCCTCTCCAGGTCACA
CCTCCTCAAGCTTAGACCCCTCCCGCCTCCTCTCCAGGTCACACCTCCTC
AAGCTTAGACCCCTCCCGCCTCCTCTCCAGGTCACGCCTCCTCAAGCCTA
GACCCCCGCCCACCTCCTCTCCAGGTC
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATAGAGCAGGCTGGCCTTGAACTCAGA
GATCCTCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCAC
CACTGCCCAGCTTGACTTTTTTTTTTTAATTTTTTTAAAAGATTTATTTA
TTATATGTAGGTACACTGTAGCTGTCTCCAGATACAGCAGAAGAGGGTGT
CAGATCTCATTATGGATGATTGTGAGCCACCATGTGGTTGCTGGGACTTG
AACTCAGGGCCTTTGGAAGAGCAGTCGGGTGCTCTTACCTGCTGAGCCAT
CTCACCAGTTTTTTCTCCCCCCCCCCCCGCCTTATTATATGTAAGTACAC
TGTAGCTGTCTTCCCACCCCCCAAAAAAAAACATCAGATCTCAGCCCTTT
GACTTTTTTTTAATGCAGTATATATACAACGATTTAAACAAAACTTGAGG
AAACCCCCTCACTGTGCATGGTGTGAGCATCTCTTCTGCTTCTTTTTCCT
TATTCCTTTTCTGTTGTTCAGTTCGGTATGGCTTGGTTTTTAATGGAAAC
CAGCTGAACCGTAAGCTGATTTAGTGACAGGCAGAGCCATGCCTTCTAAG
AGAGTGCCAGCCTTCCCAAGCCCAGTGTCCACTCAGTAACGGAGCATTGC
CTGGAGTGCATTCTATTCGTAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_i21.b1 MSMg01no163_i21.b1 CHROMAT_FILE:
MSMg01no163_i21.b1 PHD_FILE: MSMg01no163_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:10 2005
         (318 letters)



>mm_chr19_41798962_41799678
          Length = 717

 Score =  567 bits (293), Expect = e-166
 Identities = 309/315 (98%), Gaps = 3/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtaaaaagatttaattcttcacccaaattgcttccaaggtgctgaaaaaaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtaaaaagatttaattcttcacccaaattgcttccaaggtgctgaaaaaaaaa 264

                                                                       
Query: 65  -tctcattctaccttcaagaaacccaaattaaaaaaaaaaaatcacacaaggtttatgtg 123
            |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 265 atctcattctaccttcaagaaacccaaattaaaaaaaaaa--tcacacaaggtttatgtg 322

                                                                       
Query: 124 tgtggtttgaatgaataaagccatagaaaacgccagtcactatctcataccaaaaggaat 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtggtttggatgaataaagccatagaaaacgccagtcactatctcataccaaaaggaat 382

                                                                       
Query: 184 agacaaattcttaggggtgaggctgggaaaggggccaataaatgtacatttccattttaa 243
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agacgaattcttaggggtgaggctgggaaaggggccaataaatgtacatttccattttaa 442

                                                                       
Query: 244 atgaaaacgctatattcacagactgagtgtttctattctgactccccactcccacccgct 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgaaaacgctatattcacagactgagtgtttctattctgactccccactcccacccgct 502

                          
Query: 304 ttcacaaacagattc 318
           |||||||||||||||
Sbjct: 503 ttcacaaacagattc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)