Query= MSMg01no163_j06.b1 MSMg01no163_j06.b1 CHROMAT_FILE:
MSMg01no163_j06.b1 PHD_FILE: MSMg01no163_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:12 2005
(681 letters)
>mm_chr19_34167568_34168648
Length = 1081
Score = 1193 bits (617), Expect = 0.0
Identities = 665/683 (97%), Gaps = 5/683 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttccatcagaatgttctggtttgagaaagctacagtaggtagacattcctcag 63
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttccatcagaatgttctggtgtgagaaagctacagtaggtagacattcctcag 263
Query: 64 taaagcaaaatataccaggtctcttcggaaacctttgccttttcagaaagctgtttcaga 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaagcaaaatatagcaggtctcttcggaaacctttgccttttcagaaagctgtttcaga 323
Query: 124 acacagccaacactggtctgggtgatttcaacacatacaagtgatctgagaaaccagcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acacagccaacactggtctgggtgatttcaacacatacaagtgatctgagaaaccagcct 383
Query: 184 taactgtccatacagattttcaacatggagaaaccagatgctcgatagaccaggcagctt 243
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 taactgtccatatagattttcaacgtggagaaaccagatgctcgatagaccaggcagctt 443
Query: 244 taactacacctaacctagcaaatacaattcctcgggaccatgctctgctgttggggtcac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taactacacctaacctagcaaatacaattcctcgggaccatgctctgctgttggggtcac 503
Query: 304 ctgaccag---gcttcttttttttttttt--aatactttttattaggtatttttctcatt 358
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 504 ctgaccaggctgcttcttttttttttttttaaatactttttattaggtatttttctcatt 563
Query: 359 tacatttccaatgctatctcaaaagtcccccataccctctcacccactcccctacccacc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacatttccaatgctatctcaaaagtcccccataccctctcacccactcccctacccacc 623
Query: 419 cactcccactttttggccctggcgttcccctgtactgaggcatataaagtttacaagtcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cactcccactttttggccctggcgttcccctgtactgaggcatataaagtttacaagtcc 683
Query: 479 aatgggcctcactttccagtgatggctgactaggccatcttttgatacatatgcagctag 538
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 684 aatgggcctctctttccagtgatggccgactaggccatcttttgatacatatgcagctag 743
Query: 539 agtcaagagctccggggtactggttagttcataatgttgttctacctatagggttgcaaa 598
|||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
Sbjct: 744 agtcaaaagctccggggtactggttagttcataatgtttttccacctatagggttgcaga 803
Query: 599 tccctttagctccttgggtactttctctagctcctccattgggagccctgtgatccatcc 658
|| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 804 tctctttagctccttggatactttctctagctcctccattgggggccctgtgatccatcc 863
Query: 659 aatagctgactgtgagcatccac 681
|||||||||||||||||||||||
Sbjct: 864 aatagctgactgtgagcatccac 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_j06.g1 MSMg01no163_j06.g1 CHROMAT_FILE:
MSMg01no163_j06.g1 PHD_FILE: MSMg01no163_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:12 2005
(352 letters)
>mm_chr19_34338483_34339234
Length = 752
Score = 627 bits (324), Expect = 0.0
Identities = 345/352 (98%)
Strand = Plus / Minus
Query: 1 aagtgtatgagcgagaattgcttttggcctggtggaacttacaagtttaagcctgctttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aagtgtatgagcgagaattgcttttggcctggtggaacttacaagtttaagcctgctttt 493
Query: 61 ttattttaattgacccttgtaaaattcaaatcccagaaagaaatcataaagcaaaatatc 120
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 492 ttattttaattgacccttgtaagattcagatcccagaaagaaatcataaagcaaaatatc 433
Query: 121 ttggtttttatgttccttcttcatctatgacagtttaaaaaattgtagttattgtgctga 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 432 ttggtttttatgttccttcttcatctatgacagtttaagaaattgtagttattgtgctga 373
Query: 181 gtcttgctattaaaaggttgttttcaggtgtgctacagttatcacttttgtggtagcaaa 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtcttgctattagaaggttgttttcaggtgtgctacagttatcacttttgtggtagcaaa 313
Query: 241 tgtggactgtcataaaatgcatgcaggaatggaacagtactaaaaatcatactattgcca 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 312 tgtggactgtcataaaatgcatgcaggaatggaacagtactaagaatcatactattgtca 253
Query: 301 ctagaatccagcactccagcacactttgtcagcctacatggcaatctgtaaa 352
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 252 ctagaatccagcactccagcacactttgtcagcctacatgggaatctgtaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space: 254849
Effective search space used: 254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
