BAC Information

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BAC

Clone NameMSMg01-164B19
Chromosome19 (Build37)
Map Location 51,319,088 - 51,319,395
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs1
Downstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164B19.T7 (MSMg01no164_b19.b1)MSMg01-164B19.TJ (MSMg01no164_b19.g1)
ACCAG362694AG362695
length713726
length of high quality
(start - end)
316 (53 - 368)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no164_b19.b1 PHD_FILE: MSMg01no164_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:52 2005CHROMAT_FILE: MSMg01no164_b19.g1 PHD_FILE: MSMg01no164_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACCCCGTGCTATATGAAGATTCTTATTCTTTTCCACAA
TTAATATATGTCTTAAATTTGCCTCATGCTATATGAAGTATCTTCTCTTT
TTTTCCACTATAGATTAACTTAGTTATCAATATTTGCATTTACTATGGAA
GCCCCTAGCATTTTTTTTTCATTTGTAAACAGAGATGGAAAATGGTTCTC
AACTGCAGTATGAAAAATATAGTTAGGGAACAGTCTTTGTATTTATGAAC
CAAAATTAGAGTTTATTGGTATTTGGTTTTGCTATAGATGTATGTGTATA
AGAATGACTAAGGTATTTTTTTTCTCACCCCCCCACCCAGTAACATCAAT
ATGCTGTGTGAGCCAAGGGGGCACCCCCGCAAGAAAGGAAGAAGAATAGA
GCAGGTCACAGAGGGAGGGATAAAAAAAGGAGGGAGGGCAGGTGGGAGGG
AGTCAGGATCTACAATAGATTTTATACAAGACTACCAAATACAATTGGTA
TCAGAATAACTTTTCCATTACAAACTATAAGGCAATATACTGCTACGTGG
CACCACATAAGAATAGCATTCCATACCTATTTAAGTCCAAAATCCTACCG
CATTTCAAGGCCTTTATTTCCTGTTACAATACCAAAGAATCCGAACTTAT
AGTACCCCATTAT
ACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGATGATTTGGATTTTTGATAAGAAT
CATAGAGTTCCCTTTCTCTCTGTATAAAATGACTTTGATTTGGTTGTTTT
AATTTATATTATTTAATTATATTATTATTCCTTAGACTCCTTCTTGTTTC
CTAGAAAGAGAAAGAAATAGTGAGGAATTGGATAGAATGGACATGTGGAA
AAACTGGGGATGTAGGAGAAAGAAAAACTGGAATCAGAATAATTGTATTA
GAAATCTACTTTTGTTTTTCATTTTATTGAAAGCAGACTTTGTTCCTCAC
ATAATGTAACCTGTATTACATTCCCCCCCCCCCCTCCATGTCTCTTAATC
CTTCCCTACCTCCCTTCCATCTGATCCACTCAGTTTCTGATTCTCATTTG
AAAATAATGGGCTTCTAAGGGGCAATGATAAAATATAATATAAAAGCTGA
GCAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTG
TTGAAGGACATCTGTGTTTTTTCCAGCTTCAGGCAGTTATAAATAAGGCT
GCTATGACCATAGTGGACCATGTGTCCTTGTTACATATAGGAGATTCTTT
TGGGTATATTTCTGGGAGTGGTATAGCTGGGTCCTCAGGTAATACTATAT
CCAATTTTCTAAGAAACCCACATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_b19.b1 MSMg01no164_b19.b1 CHROMAT_FILE:
MSMg01no164_b19.b1 PHD_FILE: MSMg01no164_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:52 2005
         (316 letters)



>mm_chr19_51318884_51319598
          Length = 715

 Score =  551 bits (285), Expect = e-161
 Identities = 303/309 (98%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccccgtgctatatgaagattcttattcttttccacaattaatatatgtcttaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccccgtgctatatgaagattcttattcttttccacaattaatatatgtcttaa 264

                                                                       
Query: 65  atttgcctcatgctatatgaagtatcttctctttttttccactatagattaacttagtta 124
           ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||
Sbjct: 265 atttgcctcatgctatatgaattatcttttctttttttccactatagattgacttagtta 324

                                                                       
Query: 125 tcaatatttgcatttactatggaagcccctagcatttttttttcatttgtaaacagagat 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tcaatatttgcatttactatggaagcccctagcatttttttt-catttgtaaacagagat 383

                                                                       
Query: 185 ggaaaatggttctcaactgcagtatgaaaaatatagttagggaacagtctttgtatttat 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaaaatgtttctcaactgcagtatgaaaaatatagttagggaacagtctttgtatttat 443

                                                                       
Query: 245 gaaccaaaattagagtttattggtatttggttttgctatagatgtatgtgtataagaatg 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaatcaaaattagagtttattggtatttggttttgctatagatgtatgtgtataagaatg 503

                    
Query: 305 actaaggta 313
           |||||||||
Sbjct: 504 actaaggta 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 715
Length adjustment: 9
Effective length of query: 307
Effective length of database: 706
Effective search space:   216742
Effective search space used:   216742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)