BAC Information

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BAC

Clone NameMSMg01-164K15
Chromosome19 (Build37)
Map Location 34,996,888 - 34,997,176
singlet/doubletsinglet
Overlap geneMphosph1
Upstream geneLipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1
Downstream geneLOC383464, LOC100042292, A830019P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164K15.T7 (MSMg01no164_k15.b1)MSMg01-164K15.TJ (MSMg01no164_k15.g1)
ACCAG363070AG363071
length752773
length of high quality
(start - end)
329 (45 - 373)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no164_k15.b1 PHD_FILE: MSMg01no164_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:35 2005CHROMAT_FILE: MSMg01no164_k15.g1 PHD_FILE: MSMg01no164_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAAACACCAGAAAAACAGTAGTGTACAAGATGTTAATGTGTGTTC
CTTTCAGACTGGAATACAGACCAGTAAATAACAGATAATAGCTAGCTAAA
CATAATCTGCCTTTATGTGCATTAATCTGCCTTTAGGGAAGGGAGCAATA
GAATTCACAAGTGAGTTTGAGCCCAGTGGTGGGTACATACGTGGGACTCT
CTTAAAAACCAAAACAGAAAAAGCAAGTGTTCCCTGAGGTAGTTTACTAT
GATCCCTAGCTTCCTCATTAACTGATATAACCCTGATCAGTTTCCTTGAT
TATTGTATATTTGTTTTTGCCCCCCCCCCCGCCATTGTAACTTTTAAATT
ATTGTTACTTAACATTACTAAACTCAAAGTCTTGAAATTGCATGAAAAAA
AAAGAATGACATTAGAAGGTACCCACAATACAAAAGTCTTTTCTAGCATC
TTCCTTGTGCTCAACCAGTAAACTGAATTATCCTGTTCATCCCCTTCAAT
TTAGAAGACTTTAGTGAGTATATAACAAAAGGTTGACAGTGAAATATTAC
CAGGTAACTTAGTAACCTGATGCTGCTTAATGCAGAAAAGACTTATAGTG
CAAATAAAATGGTAGGAGATGTGAACACTTGTCAGCCTGTGGCCTATTTC
AAAAAAAAGAGGGACCATGCACTAGCTTATTCATTGATTACTATACTGAA
AT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCAGGTGGGGAGGCGTGCAGGGACCAGCG
TTTGCAGCAGGTGAGGAGCTGACGATTTTGGGGGCTCCGAGGGTGGCTGC
TTGCACAGAGGGCACGAAGCTGCGACACCTTGGCCGTGTCAGCGTTGCCA
GGGCTCGTGATGCCCGTAGTCTAGGTGCCGGGCTGCTGAAGGTGGGGCTG
AGCTTCAGGGAGTTAAGCGAGTTAAGCCTTGAGGCGGAAGACTTCGGTCT
GTCTAGGCCTCGGTTTCCTGGTCCGGTAAAGGAGGTACACTTTAGATTCA
CAGACACTATTTTTATTACCCCCCCCCCCCATTTGCCACATCTGGTTGCC
TGAATCCGGGAGGCGACCAGTTGTTTTGACACATGACAAGATCTCTTTCT
AGGTTGAGTCCAGTGGGGGCTTTAAAAAAAAAAATTGTCACATTACTTTG
TGGTTAGAAAAGAAGCATATTTGGTTTTAATGTGTATCTAAAGAAAATTG
ATGTGAGTCAGTTTTTTCTGAGTACCACTTACGTTGTTCTGTTATTTCTT
ATTCTCGTCTCTATTATTATCCATTTTCACATGATTGTCCTTTCCATTAA
TATTGTCAACCCGGTTTGTTTACATGCTATTTTATTGTTATAACTGTTCT
CTCTTTATTTATTACGGTTAGTCTGTTTATCCCTTTTCCCCTTTGTTTAT
TAATTTTTCTCTATTTCTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_k15.g1 MSMg01no164_k15.g1 CHROMAT_FILE:
MSMg01no164_k15.g1 PHD_FILE: MSMg01no164_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:35 2005
         (289 letters)



>mm_chr19_34996688_34997376
          Length = 689

 Score =  497 bits (257), Expect = e-145
 Identities = 281/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcaggtggggaggcgtgcagggaccagcgtttgcagcaggtgaggagctgacgattttg 60
           |||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 201 tgcaggtggggaggcgtgcagggaccagcgattgcagtaagtgaggagctgacgattttg 260

                                                                       
Query: 61  ggggctccgagggtggctgcttgcacagagggcacgaagctgcgacaccttggccgtgtc 120
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 261 ggggctccgagggtggctgcttgcacagagggcacgaagctgcgacgcctcggccgtgtc 320

                                                                       
Query: 121 agcgttgccagggctcgtgatgcccgtagtctaggtgccgggctgctgaaggtggggctg 180
           ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 agcgttgtcggggctcgtgatgcccgtagtctaggtgcggggctgctgaaggtggggctg 380

                                                                       
Query: 181 agcttcagggagttaagcgagttaagccttgaggcggaagacttcggtctgtctaggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttcagggagttaagcgagttaagccttgaggcggaagacttcggtctgtctaggcct 440

                                                            
Query: 241 cggtttcctggtccggtaaaggaggtacactttagattcacagacacta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cggtttcctggtccggtaaaggaggtacactttagattcacagacacta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)