Query= MSMg01no164_k19.b1 MSMg01no164_k19.b1 CHROMAT_FILE:
MSMg01no164_k19.b1 PHD_FILE: MSMg01no164_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:35 2005
(319 letters)
>mm_chr19_49802648_49803366
Length = 719
Score = 588 bits (304), Expect = e-172
Identities = 313/316 (99%), Gaps = 2/316 (0%)
Strand = Plus / Minus
Query: 5 gaattctctggttttgttgtcttgagattttcttgctattgtcttttaaatagggaatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaattctctggttttgttgtcttgagattttcttgctattgtcttttaaatagggaatta 358
Query: 65 attaacactaaagttacacttattaattttgtgtatgaaatattaggaagtatgtataat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 attaacactaaagttacacttattaattttgtgtatgaaatattaggaagtatgtataat 298
Query: 125 ctgaggatactaactcatgaaaatatgtgtgacaggaaaatgaaatcacaaaatggttaa 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctaaggatactaactcatgaaaatatgtgtgacaggaaaatgaaatcacaaaatggttaa 238
Query: 185 gaacataacattaatc-ataatataaacttatggtatgtttgtgtattatatttgcatat 243
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gaacataacattaatcaat-atataaacttatggtatgtttgtgtattatatttgcatat 179
Query: 244 aaaatatatatacatataatagatttacatgtgtatgatacatatgcacacatataggat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aaaatatatatacatataatagatttacatgtgtatgatacatatgcacacatataggat 119
Query: 304 tacataattagatggt 319
||||||||||||||||
Sbjct: 118 tacataattagatggt 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no164_k19.g1 MSMg01no164_k19.g1 CHROMAT_FILE:
MSMg01no164_k19.g1 PHD_FILE: MSMg01no164_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:35 2005
(301 letters)
>mm_chr19_49680214_49680914
Length = 701
Score = 513 bits (265), Expect = e-150
Identities = 289/297 (97%)
Strand = Plus / Plus
Query: 1 aagtcataattgtaaaacagttaagatctccatctctgaggcagagttgagtcatatctc 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtcataattgtaaaacaggtaagatctccatctctgaggcagagttgagtcatatctc 260
Query: 61 tcgctgtttctgcagtactcggttgctgggaaggatatataaattcgtcaagacacattg 120
|||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tcgctgcttctgcagtactcagttgctaggaaggatatataaattcgtcaagacacattg 320
Query: 121 tatgatttctgaaacaaggattaacacaactcaaagggttgttgagaaaattaaaatttt 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tatgatttctgaaacaaggattaacatgactcaaagggttgttgagaaaattaaaatttt 380
Query: 181 aaagaggaaaatgcttggtgcagtgtgtggtttattgctacaataaataaacactcatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaggaaaatgcttggtgcagtgtgtggtttattgctacaataaataaacactcatgt 440
Query: 241 tgttacaatggttcacagtagagatatttaaaattgactgctttgtgaatattcttg 297
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tgttacaatggttcacagcagagatatttaaaattgactgctttgtgaagattcttg 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
