BAC Information

Click to search

BAC

Clone NameMSMg01-164M04
Chromosome19 (Build37)
Map Location 29,920,038 - 29,920,470
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6
Downstream geneIl33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164M04.T7 (MSMg01no164_m04.b1)MSMg01-164M04.TJ (MSMg01no164_m04.g1)
ACCAG363130AG363131
length761751
length of high quality
(start - end)
92 (40 - 131)433 (71 - 503)
definitionCHROMAT_FILE: MSMg01no164_m04.b1 PHD_FILE: MSMg01no164_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:42 2005CHROMAT_FILE: MSMg01no164_m04.g1 PHD_FILE: MSMg01no164_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATGGGTTGAGCCTCAGAGTGGGAAGACCACCGCGATGATCACAGTACCCC
CCTCCCCCACCAGGTAAGGACAGCACTTTCAGTAGTCTNNTAAAAGAAAA
AACAACCTTTGGNGGNNNTTTTAAAAAATTTAAAAAATATAAAATAAAAA
AAAAAAAAAATTTATTTTTCAAACTTTGAGAAACCATTCTTTCAAAATAT
TTCACAGGGCCTGAAAGTTACAAATAGAACGTCTCAAAGAAGAATGTTCC
TGCTTCTATGAAAACATTGGAAAAAACTTTTTTTAAAAATTCAGGGAGGG
TGGAAAAGTGGTCCCCCGAAACCCCAAATGGGAGGGTTGGGGGAAAAAGG
GCCCCCCCCTCCCCCCTTTTTTTCTGTTTTTTCCCCCCCCCCCCCCCCCC
CAAAAAAAGAAAAAACATTCTTTTTGGAAACTGGTTAATAAATTGGCGCG
CTCTCTCTTTGGGTAAAAAAAAAAAGAAAAATTTTTTTTTCTTCTTTTAC
CACTCTTCATTTTTTCTTCCCTTCTCTCTTAAATTATTTCTCTCTTATCT
TAATAATCTTATTCTTTTTTATTTACTATATCTTCATTATTTCTTTTTTT
TTCTATTTTTTCTATTTCCACTTCTTATTTATTATTTTTTTCATTAAATC
TCCCCCTTTACCATCCCTCTTAATCCTATTATTTTAATTCATATTCTCAC
TTATCTATATC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCTTTCAGTGGCTTGGGAGCTTTCTTGTT
TTCCAGAATGACTGTGCTGTTTTACATGATCATCAGCAGTGCATGAATTC
CCCCCTTCTGCATCCTTCCCCATGTTCTCTCTAATTGTTTTAAAAACTAG
CAACCAGTACAGTGATAGCAACAGATGTACGGCGATAGTCATTGTGGTTT
AGATTGGCATGCCTATGGCGCTTACAGCTGTTGAGTGTTTTTCAAAGACG
TTCTCCGTTTGTGTGTCCTGTCTTAAGAAATGTTCATATAGGACCTTTGC
CTGCACTTCAGGTTCTTGTCTTGCTGTTGGCTTCTTGGCACATTTTAGAT
TTTACCACCTGATCTGAAATACTATTTACAAATATCCAAATCTGTGGGTT
ATCATTCATTCCTTCCTTGTCAATAGAAACCTTTCGATTTGATGCAATCT
TCTTAGCCGGTAGTTGCTTGCAGGTTCTTGAGGTCATATCTGAAAGGTCT
CTTCTATACATCACAGAGCTTTCCCCACACATTTTTTTTCAGACGTCTTC
CATTTGGGTGTCTTCATTTTAAAAGGTCCTCACTCTGTTTTAAAACCCGA
TTCGTACATAAAGAAGTGAGAAAGGGGGTCTGTGTCCATTTCTTCTGCAC
GTGGAACATTCCCATTTTCTTATTGAAAAATAATCCCCTCTGAAAAACGC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_m04.g1 MSMg01no164_m04.g1 CHROMAT_FILE:
MSMg01no164_m04.g1 PHD_FILE: MSMg01no164_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:42 2005
         (433 letters)



>mm_chr19_29919838_29920670
          Length = 833

 Score =  806 bits (417), Expect = 0.0
 Identities = 429/433 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttcagtggcttgggagctttcttgttttccagaatgactgtgctgttttacatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tcctttcagtggcttgggagctttcttgttttccagaatgactgtactgttttacatgat 260

                                                                       
Query: 61  catcagcagtgcatgaattccccccttctgcatccttccccatgttctctctaattgttt 120
           ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 catcagcagtgtatgaattccccccttctgcacccttccccatgttctctctaattgttt 320

                                                                       
Query: 121 taaaaactagcaaccagtacagtgatagcaacagatgtacggcgatagtcattgtggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaactagcaaccagtacagtgatagcaacagatgtacggcgatagtcattgtggttt 380

                                                                       
Query: 181 agattggcatgcctatggcgcttacagctgttgagtgtttttcaaagacgttctccgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattggcatgcctatggcgcttacagctgttgagtgtttttcaaagacgttctccgttt 440

                                                                       
Query: 241 gtgtgtcctgtcttaagaaatgttcatataggacctttgcctgcacttcaggttcttgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtcctgtcttaagaaatgttcatataggacctttgcctgcacttcaggttcttgtc 500

                                                                       
Query: 301 ttgctgttggcttcttggcacattttagattttaccacctgatctgaaatactatttaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgctgttggcttcttggcacattttagattttaccacctgatctgaaatactatttaca 560

                                                                       
Query: 361 aatatccaaatctgtgggttatcattcattccttccttgtcaatagaaacctttcgattt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 aatatccaaatctgtgggttatcattcattccttccttgtcaatagaaacctttcggttt 620

                        
Query: 421 gatgcaatcttct 433
           |||||||||||||
Sbjct: 621 gatgcaatcttct 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)