Query= MSMg01no166_m10.b1 MSMg01no166_m10.b1 CHROMAT_FILE:
MSMg01no166_m10.b1 PHD_FILE: MSMg01no166_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:22 2005
(313 letters)
>mm_chr19_52266287_52266999
Length = 713
Score = 563 bits (291), Expect = e-165
Identities = 300/303 (99%)
Strand = Plus / Plus
Query: 5 gaattccaaatgctgaagagaggctgtgctcttcctgagttataatccagtagcagggct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatgctgaagagaggctgtgctcttcctgagttataatccagtagcagggct 264
Query: 65 gtctttgccctgcttacacatgcctaactttctgcaagagggcatcacatcagcattgct 124
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcttcgccctgcttacacacgcctaactttctgcaagagggcatcacatcagcattgct 324
Query: 125 tatcagcattgtgccctgggatacgggcatgtagcagccacttgatgaatccaaactgaa 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 tatcagcattgtgccctgggatacgggcatgtggcagccacttgatgaatccaaactgaa 384
Query: 185 agatgattaatgttaagcagagtcgagctctcctgtacatcaagaagagcatatttaccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agatgattaatgttaagcagagtcgagctctcctgtacatcaagaagagcatatttaccc 444
Query: 245 taaaatatgcatcttttccagcaattacagccattatgtttgctgatatggatttttttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaaatatgcatcttttccagcaattacagccattatgtttgctgatatggatttttttt 504
Query: 305 ttt 307
|||
Sbjct: 505 ttt 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_m10.g1 MSMg01no166_m10.g1 CHROMAT_FILE:
MSMg01no166_m10.g1 PHD_FILE: MSMg01no166_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:22 2005
(660 letters)
>mm_chr19_52312168_52313227
Length = 1060
Score = 1069 bits (553), Expect = 0.0
Identities = 630/665 (94%), Gaps = 21/665 (3%)
Strand = Plus / Minus
Query: 1 caggctatatcactgatgcctttattaacaacatcacagcactggatgaagaacccaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 caggctatatcactgatgcctttattaacaacatcacagcactggatgaagaacccaggt 635
Query: 61 ctacagactctatgtagtcataaaatgtaaattccaaagccagcacaattttatgaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ctacagactctatgtagtcataaaatgtaaattccaaagccagcacaattttatgaaaca 575
Query: 121 ataacttgagccttagtggttttaaaaataaatttaaattctgttagaatttcatatatg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 574 ataacttgagccttagtggttttaaaaatgaatttaaattctgttagaatttcatatgtg 515
Query: 181 agtatactggatttacataatttcccac-tctttctctccttcattaaattcttcctatg 239
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||
Sbjct: 514 agtatactggatttacataatttcccacttc-ttctctccttcattaaattcttcctgtg 456
Query: 240 tcctgcaccattacttcatcttaatttcacaaccatttacaaaattattgttctctatct 299
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcctccaccattacttcatcttaatttcacaaccatttacaaaattattgttctctatct 396
Query: 300 tctgtctgtctctgtttttctctctccctcataggcacacacccacatgta----tacac 355
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 395 tctgtctgtctctgtttttctctctccctcataggcacacacccacatgtacacatacac 336
Query: 356 acacacacacacacacacacacacacaaacacacacacacacacacacaccatgcataca 415
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 335 acacacacacacacacacacacacaca--cacacacacacacacacacaccatgcataca 278
Query: 416 gactcctatgtaaaacctattggatctactgagactcattagtgctccccatatgtaaat 475
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 277 gactcctatgtaaaacctattggatctactgagactcattagtactgtccatatgtaaat 218
Query: 476 gtatttagggctgaccacttaggtttgagaaacctatcaggggcactgtgcttgtagaaa 535
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 217 gtatttagggctgaccacttaggtttgagaaacctatcatgggcactgtgcctgtagaaa 158
Query: 536 gctgattatccttcctcatgaaatttcaaaaggaacagactgtacatccaacaatttttc 595
|| |||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 157 gccgattctcctttgtcatgaaatttcaaa-ggaacagactgtacatccaacaatttttc 99
Query: 596 aggtcttgaggaaaagggtagcttatataaattcttaggattttatttattagtagtatt 655
||||||||||||||| |||||||||||||||||||| | |||||||||||
Sbjct: 98 aggtcttgaggaaaaaggtagcttatataaattctt-g-----------ttagtagtatt 51
Query: 656 agata 660
|||||
Sbjct: 50 agata 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
