Query= MSMg01no166_p11.b1 MSMg01no166_p11.b1 CHROMAT_FILE:
MSMg01no166_p11.b1 PHD_FILE: MSMg01no166_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:37 2005
(274 letters)
>mm_chr19_38898545_38899218
Length = 674
Score = 453 bits (234), Expect = e-132
Identities = 259/272 (95%), Gaps = 10/272 (3%)
Strand = Plus / Minus
Query: 5 gaattcaaatctctttc--cttgatattcattaactcctattagttgtaggtacctaccc 62
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gaattcaaatctc--acagcttgatattcattaactcctattagttgtaggtacctaccc 375
Query: 63 catgaccagccctatcacggaaaggagcgggctcacagggccctaccttttacttctact 122
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 catgaccagccctatcaaggaaaggagcgggctcacagggccctaccttttacttctact 315
Query: 123 tcagagcacatggctctcaaagattctggaagaggttagatcattgtttttcgttggcta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcagagcacatggctctcaaagattctggaagaggttagatcattgtttttcgttggcta 255
Query: 183 ccctttgctgagcccaccaggttccagcagagagctacaaactttttttttttttttttc 242
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 254 ccctttgctgagcccaccaggttccagcagagagctacaaac------tttttttttttc 201
Query: 243 ttgagacagggtttctctgtgtagtcctggct 274
|||||||||||||||||||||||| |||||||
Sbjct: 200 ttgagacagggtttctctgtgtagccctggct 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no166_p11.g1 MSMg01no166_p11.g1 CHROMAT_FILE:
MSMg01no166_p11.g1 PHD_FILE: MSMg01no166_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:37 2005
(341 letters)
>mm_chr19_38744572_38745312
Length = 741
Score = 638 bits (330), Expect = 0.0
Identities = 336/338 (99%)
Strand = Plus / Plus
Query: 1 agaatggctagcagatcagagggtggcccagaattttctctcttcaccttcagactggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatggctagcagatcagagggtggcccagaattttctctcttcaccttcagactggcc 260
Query: 61 caccagaagtgtatcctgagctgacatttgcaggaggatttctacagattacaccagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccagaagtgtatcctgagctgacatttgcaggaggatttctacagattacaccagaga 320
Query: 121 acacacacacagacatgcacacacacaacatacacagacacagacacacacacaggcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacacacacagacatgcacacacacaacatacacagacacagacacacacacaggcata 380
Query: 181 cactgtatacaacagttaaaggaacaggctacaggtactgatttctttctctgattctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgtatacaacagttaaaggaacaggctacaggtactgatttctttctctgattctag 440
Query: 241 tactttgtatgtaaggagatcaggagtccaaggccatcctccactacatattgagttcta 300
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactttggaagtaaggagatcaggagtccaaggccatcctccactacatattgagttcta 500
Query: 301 agacaacctgggctacatgaaatcatgtaataaaaaga 338
||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacaacctgggctacatgaaatcatgtaataaaaaga 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
