BAC Information

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BAC

Clone NameMSMg01-167G22
Chromosome19 (Build37)
Map Location 60,070,894 - 60,226,315
singlet/doubletdoublet
Overlap geneLOC100043091, LOC100043093
Upstream gene4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087
Downstream geneD19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322, BC029127, LOC100043112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167G22.T7 (MSMg01no167_g22.b1)MSMg01-167G22.TJ (MSMg01no167_g22.g1)
ACCAG364919AG364920
length781715
length of high quality
(start - end)		464 (46 - 509)582 (73 - 654)
definitionCHROMAT_FILE: MSMg01no167_g22.b1 PHD_FILE: MSMg01no167_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:11 2005CHROMAT_FILE: MSMg01no167_g22.g1 PHD_FILE: MSMg01no167_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,070,894 - 60,071,349)(60,225,737 - 60,226,315)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAAGAGCCTACCACCTAAAGGAATTGGAAGAGGGCAAGATAACC
CTAGACAAGAAGACATCCTCTTTTGTAACTCAAGAGAGCCCAGGGAAATT
GTCAGGGGAACCTCATGTCCCCTGGCTGTAGCTGAGAGGTTGTTGCCTTC
GTTTTTGTGTTTTCATAACCACATGGAGCATGCATGAGTCTAAGCAGATG
AGTCACTCCACTAGATCAGGTCTTGTCCAGGTCACCATGACCTTCAGCAT
CACTGATGGTCATCTCTCAGCCTTCCTCTTACTCATGTACAGTGTTGGAC
ACTGTTGATCAGTTGTTGTCCTTCAAAATAGTCTTTTCTAGTTGTGTTAG
TATCCACATATACCTAATGCACCTAGAAAAGATATATAGTATAAAAATAT
ATATAATAAATAATATATGTGTGGATATATATACATATGTGTATATATGT
GTGTGCGCGCGCACTGTTTTTTCTTCCCCTCTTTTCTTTTTTTTCTCTCT
TTTCCCTTTTTATTTTTCTTTCTTTTTTCTTTCTCCCCTTTTTGTCTTTT
CCTTTCTTTTGTTCTCCTCCTTTTCCTTTTTGTTCTTTTTGTATCCTTAT
CTATCTCCTCCCTTTTTTCTTCTCCCCCCCCTTTTTTCCTTTTTTCATTC
TGCCTCACCCGTTCCCTTTGTCCTTTTCCCCTTACCCTATTCCATCCCCT
CTTTAGCACTTATTTACTCGCTTTATTTTCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTATGGGGCATTTGCTTGGTACTTGAG
TGCTGGAGACACCGCTAGCAGGAGCTTCTGAGCAATGGTGTGTAACAGCT
TGTTATGGCTAAGCCAAAGCTGTATTCGAGAGCTACTGCCTCTTAACAGC
CTCTTTGGAGCTCTAGGGCCTATGAGGAATAGACAAGGTCTTCCGGCAAC
CTGGAGGTTAGGCATCTAGATGTGTCTAGACAGAGAAGTCATTTCAACAC
TCAGGAGCTGTTGTGAGGCACTGTGCATACAGGAAGCCAGTGTACTGGAC
TTGCTATTTTGTTTCTAGTGGTAGCAGTTAGTGTTATTTTGTTTCTGGCC
ACAGCAGCACTTTGAGGCAGCTGTCTCACCCACAAGAGTCTCCTTCAGAG
GTGGGATTCGGATGCATTCAAAGATGTGTTCATATTTTGTTGTTCTGTTG
GGCTTTTGAGGCAACCAGGCTGGCTTTGAACTCATAACTTTCCTGCTCTG
TCTTCTGAGAGTTGGGATTACAGGTGTGTGGCTTGTTGCCTGGCTTTGGT
TGTTTGCCTTCCCAGTGACAGTTCCTTTTATCTTTGCTGGCCTTTGTATC
AAAGCCCTGTGAATATACGGAGCTCTGGACACCTCATGGAAGACAGGGTG
GCGTGGATATGATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_g22.b1 MSMg01no167_g22.b1 CHROMAT_FILE:
MSMg01no167_g22.b1 PHD_FILE: MSMg01no167_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:11 2005
         (464 letters)



>mm_chr19_60070690_60071553
          Length = 864

 Score =  843 bits (436), Expect = 0.0
 Identities = 451/456 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaagagcctaccacctaaaggaattggaagagggcaagataaccctagacaag 64
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaagagccaaagacctaaaggaattggaagagggcaagataaccctagacaag 264

                                                                       
Query: 65  aagacatcctcttttgtaactcaagagagcccagggaaattgtcaggggaacctcatgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagacatcctcttttgtaactcaagagagcccagggaaattgtcaggggaacctcatgtc 324

                                                                       
Query: 125 ccctggctgtagctgagaggttgttgccttcgtttttgtgttttcataaccacatggagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctggctgtagctgagaggttgttgccttcgtttttgtgttttcataaccacatggagc 384

                                                                       
Query: 185 atgcatgagtctaagcagatgagtcactccactagatcaggtcttgtccaggtcaccatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgcatgagtctaagcagatgagtcactccactagatcaggtcttgtccaggtcaccatg 444

                                                                       
Query: 245 accttcagcatcactgatggtcatctctcagccttcctcttactcatgtacagtgttgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accttcagcatcactgatggtcatctctcagccttcctcttactcatgtacagtgttgga 504

                                                                       
Query: 305 cactgttgatcagttgttgtccttcaaaatagtcttttctagttgtgttagtatccacat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cactgttgatcagttgttgtccttcaaaatagtcttttctagttgtgttagtatccacat 564

                                                                       
Query: 365 atacctaatgcacctagaaaagatatatagtataaaaatatatataataaataatatatg 424
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atacctaatgtagctagaaaagatatatagtataaaaatatatataataaataatatatg 624

                                               
Query: 425 tgtggatatatatacatatgtgtatatatgtgtgtg 460
           ||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtggatatatatacatatgtgtatatatgtgtgtg 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no167_g22.g1 MSMg01no167_g22.g1 CHROMAT_FILE:
MSMg01no167_g22.g1 PHD_FILE: MSMg01no167_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:11 2005
         (582 letters)



>mm_chr19_60225675_60226656
          Length = 982

 Score = 1120 bits (579), Expect = 0.0
 Identities = 579/579 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatggggcatttgcttggtacttgagtgctggagacaccgctagcaggagcttctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 actatggggcatttgcttggtacttgagtgctggagacaccgctagcaggagcttctgag 582

                                                                       
Query: 61  caatggtgtgtaacagcttgttatggctaagccaaagctgtattcgagagctactgcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caatggtgtgtaacagcttgttatggctaagccaaagctgtattcgagagctactgcctc 522

                                                                       
Query: 121 ttaacagcctctttggagctctagggcctatgaggaatagacaaggtcttccggcaacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttaacagcctctttggagctctagggcctatgaggaatagacaaggtcttccggcaacct 462

                                                                       
Query: 181 ggaggttaggcatctagatgtgtctagacagagaagtcatttcaacactcaggagctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggaggttaggcatctagatgtgtctagacagagaagtcatttcaacactcaggagctgtt 402

                                                                       
Query: 241 gtgaggcactgtgcatacaggaagccagtgtactggacttgctattttgtttctagtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gtgaggcactgtgcatacaggaagccagtgtactggacttgctattttgtttctagtggt 342

                                                                       
Query: 301 agcagttagtgttattttgtttctggccacagcagcactttgaggcagctgtctcaccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agcagttagtgttattttgtttctggccacagcagcactttgaggcagctgtctcaccca 282

                                                                       
Query: 361 caagagtctccttcagaggtgggattcggatgcattcaaagatgtgttcatattttgttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 caagagtctccttcagaggtgggattcggatgcattcaaagatgtgttcatattttgttg 222

                                                                       
Query: 421 ttctgttgggcttttgaggcaaccaggctggctttgaactcataactttcctgctctgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttctgttgggcttttgaggcaaccaggctggctttgaactcataactttcctgctctgtc 162

                                                                       
Query: 481 ttctgagagttgggattacaggtgtgtggcttgttgcctggctttggttgtttgccttcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttctgagagttgggattacaggtgtgtggcttgttgcctggctttggttgtttgccttcc 102

                                                  
Query: 541 cagtgacagttccttttatctttgctggcctttgtatca 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 101 cagtgacagttccttttatctttgctggcctttgtatca 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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