BAC Information

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BAC

Clone NameMSMg01-168H01
Chromosome19 (Build37)
Map Location 22,182,025 - 22,182,150
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneTrpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168H01.T7 (MSMg01no168_h01.b1)MSMg01-168H01.TJ (MSMg01no168_h01.g1)
ACCAG365623AG365624
length821804
length of high quality
(start - end)
128 (62 - 189)34 (466 - 499)
definitionCHROMAT_FILE: MSMg01no168_h01.b1 PHD_FILE: MSMg01no168_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:41 2005CHROMAT_FILE: MSMg01no168_h01.g1 PHD_FILE: MSMg01no168_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTAAGTGTCCAGGGTATAAGATTATGATAAGAGTGGTTTCACC
AATTACTGGAAATGTGAGGAAGCCCTGGCTAGTTAGTGAGTATTAGATAG
TTTATAATAGGTAGATTTTGTGAGGACCAGGAAAGTGGACATTAGGTGGG
GGAGGGGAATGTTTCCCCCCTTTACTTTCTTTTTGTCCTCCTCTCCTCTT
TTCTCCCCCTTTCTCCTCCCTTTTTTCCCCCCTCTCTGTTTTTCTTTTCC
TCTCCCTTTCTCCTTCCTTTTTTTTCTCTCTTCCCCACCTCCCCCCCCCC
CTTCTTTTTCCACTTTTTTGTATTTTTCTCCCCCCCCCCCCCCCCCCCTT
TGTATGTTGTTTGGTTGATTATTTATATGTGTGTTTTTCCCCCCACACAA
CAAACAAAACCTCTTCGTGTGTCCGGGCGGCCCTCTTCCGCCCTTTTTTT
TTCCTCCCTTTCCCTTCCTCCTTTTCAATCTTGATTTTCCCTCCTCCATT
CCCCATATCCCCCCCTTCTCCCTATCCCTCTTTCCTTCCCCATTTTTCCC
TCTCCTCCTTTATCCTCTCCCCCTTTTTCTACTCCCCCCTTTTTTTTCCT
GCCCTCCTTCCTCCCTCTTCTTTCCCCCCCTTTTTCTTCTTTCCCCCCCT
CTCTCTTCCCCTCCCTACCCTTCATCCCTCCCCCCGCCCCTCTTATTTCC
CCCCGTTCATCTTTCCCCCCTAATTTCCTCTGTATTTCACCTCTCCTCTT
TTCCCCCTACTTCCCCCTTTT
TTTATTCTCTGAAACCACAAAAAGTGAAGGGGGGGAATTAAAAGAANACA
AGAAAAGAAGGGGTAGGGAGGNGGGGGCCGGTTCGGACCTGCANGNGNNN
NGGGGGTTTACAAAAAAAAGGGGNNNGAAAGGAGAAAGGANNNGGGAAAA
AGAGGGGTGTGTACCAAAAAAAAGAGGGGGGGAAAAGGAGAAAGAAAAAA
AGAGAAAGAAAGAGGGGGAAAAGAAAAAAGAAGAGGAAAAGGAAAAGGAA
AGGAAAAGGAGAGAGGGAGGAGGGGAGGGAAAAAAAGAAGAGGAAAAGAA
GGAGAAAGAAGAAGAGAAAGAGAGGAAGGGAGGAGGGGGGAAAGGAAAAA
GGGGGAATTTTATTTGAAAAGAGAGAGAGAAAAGAGAAGAAAAAAAAGAT
TGTAATTAACACCACCCCCCCCCGGGAGGGGGNAGGGGAAAGANGGGGAG
GGGGGGGGGGNGAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGGG
GGGNGANGAGGGGGAGGAAGAAAAAAAGAAGGAAAAAGAGAAAAAGAAAG
AGGAAAAGGGAGGAGAAGAAAAGAAGGAAGGGGGGAAGAAAGAAGGAGGG
GAAGGAAGAAGGGGGGAAGGGGAGGGGAGAAAAGAGAAGAGGGGGGGAAG
GAGGGAAAAAGGAGAGGGAAAAAGAAGGGGAAAGGAAGGGGGAGGGGAAG
AGAGAAAAGAAAAAGAGAAAGAGAGGGGGGGAACAAAAAGAAGAAAAAAA
GAGGGGGGAGAAAAAAGAAAGGGGGAGAGGGAAAAGAAAAGAGAGAAAAA
AGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_h01.b1 MSMg01no168_h01.b1 CHROMAT_FILE:
MSMg01no168_h01.b1 PHD_FILE: MSMg01no168_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:41 2005
         (128 letters)



>mm_chr19_22181825_22182352
          Length = 528

 Score =  236 bits (122), Expect = 4e-67
 Identities = 125/126 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtccagggtataagattatgataagagtggtttcaccaattactggaaatgtgaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtccagggtataagattatgataagagtggtttcaccaattactggaaatgtgaggaa 260

                                                                       
Query: 61  gccctggctagttagtgagtattagatagtttataataggtagattttgtgaggaccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gccctggctagttagtgagtattagatagtttataataggtagattttgtgagaaccagg 320

                 
Query: 121 aaagtg 126
           ||||||
Sbjct: 321 aaagtg 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)