BAC Information

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BAC

Clone NameMSMg01-168H04
Chromosome19 (Build37)
Map Location 24,790,709 - 24,790,986
singlet/doubletsinglet
Overlap genePgm5
Upstream genePtar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik
Downstream geneLOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168H04.T7 (MSMg01no168_h04.b1)MSMg01-168H04.TJ (MSMg01no168_h04.g1)
ACCAG365629AG365630
length961731
length of high quality
(start - end)
---286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no168_h04.b1 PHD_FILE: MSMg01no168_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:42 2005CHROMAT_FILE: MSMg01no168_h04.g1 PHD_FILE: MSMg01no168_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATATTTGCGGGCGCGGNNNCGGGGCCCGAATGCGTTACTGCCNNGNG
GANNGNGGNGNNTTATCGGAAACAAGGGGGGNNNNNANNNGANNGGGNNG
NNGGNNNNAGNNGGGNNGGNNGTTTTTTCCCCCCCCGAGGGGGGGNAGAN
AGAAGGGNNAGAGGAAAGGGAGGGGTAAATGGGGGAGGGGGGTTGTATGA
ATTAGGAAAAAGAATGGAGAATGGTAAGAGGTGGTTTGAGTGATGGATAT
TGTAGATAGTTGGTAGGTTAAGTAATTATTTTTTTTNAGGAGTGGGGGAG
GGGGGGGGGTAGGAGGTGAATGATTGGGTGAAGGTGAGGGGTTAGAGGGN
NNGGAGGAGTTTTAGATAACATTCCCCCGGGAGNGGACCGGGAGCGGAGC
CGACACCAGCCGATTTTTANATAACTTTCCCCCAGAGGCAGGGGCCCCCC
GGAAAGNGGAAANAGNNNGGGGGNNGNGNGGNNNGGGGGGNNNNNNAAAA
AAAAAAGGNGGAGNNNNAAAAAANNGGGGGGGGGGGNNGGGGGGGGGNNN
NNGANNNNNGNNGNNNNGGGGGGAGGGGGGGGAGGGNAGGAGGAGAAGGG
GAGAGAGAGAAAGGGAGGGAGGGGGGAGAGAGAGGGGGGAGGGGAGGGGA
AAGGGGGGGGAGGGGGGGGAGGGGAGGAGGAGGGGGGGGGGAGGAGGAAA
AGGGGAGGAAGGGNAGAGGGGAAGAGGGAAGGGGGGGAGGAGGAAGAGAA
GAGGGGAGAGGAGGGAGAGGAGAGGGAAGGGGGGGGAGGGGAGGAAAAAG
GGAGGNAAGAGGGGAGGGAGAGTTTATGTTTGTGTTTATTTTTTTTGAGA
GAGAGAAAGAGAAGTATGATGTATAAAATATAAGGTTAAGCCAAAGTTAT
ACAGGAAGAATGAAATGTTTATATATAGTCGACTTTGTATTAATCACACC
TCTTCTATTTC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCCTACATCAGCATTGTAAGTCAG
ATGCTGCCAATAGCTGTTGGTAACACACAGTTCCCCCCTCCCGCCTGGCT
GCAACATCTCCTATAGGCTCCAAGCTAACATCTGGCGGCTCTGCATGGAT
TTAGCAACTAGCACATCTCTCTGCCTTGATTTACATGCAGGATTTTTAAA
AACAAAAAGCCAAACAACAGCCCTTCCAACACTCATTTATCAAACACTTA
TCAGAAACTTACTTTACATAATGCTGTAAGCCAGCTTTGAGGACCATACA
AATCAGGATTTTTTTTTCACATTTCTTGCCTGAGAAGTGGTCCTGGGACA
TGGGTTCTTTTGTATGGCCCGACATCAGATCATTTGCCTGGAGTCAAAAG
ACCTGGAGGCTCTTACTATGTTATAACACTGAACCAGCTTCAACAATTTC
CTGTCTCCTCCATAAGCAGAGAAAGTGGCCAGGACCCCATCTGAGGGTTT
TTAGATCTCTCAGTTACTAATGACTATTAATAAAGAAACATTTTATTGCT
GAAGAAGTCATTTCAGGGACAGACATGTGGAAGGTAATTGGCAGAAGATG
GACAAGATCAACAGTGAATCCAGAGGGCAGGCGATACTCAATCCCTAGGA
CTCCCATGAAAGACGAAAAGAATCAACTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_h04.g1 MSMg01no168_h04.g1 CHROMAT_FILE:
MSMg01no168_h04.g1 PHD_FILE: MSMg01no168_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:42 2005
         (286 letters)



>mm_chr19_24790509_24791189
          Length = 681

 Score =  505 bits (261), Expect = e-147
 Identities = 276/283 (97%), Gaps = 5/283 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcctacatcagcattgtaagtcagatgctgccaatagctgttggtaacacacagttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atcctacatcagcattgtaagtcagatgctgccaatagctgttggtaacacacagttccc 419

                                                                       
Query: 61  ccctcccgcctggctgcaacatctcctataggctccaagctaacatctggcggctctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccctcccgcctggctgcaacatctcctataggctccaagctaacatctggcggctctgca 359

                                                                       
Query: 121 tggatttagcaactagcacatctctctgccttgatttacatgcaggatttttaaaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||  ||
Sbjct: 358 tggatttagcaactagcacatctctctgccttgatttacatgcagg---tttaaaa--aa 304

                                                                       
Query: 181 aaagccaaacaacagcccttccaacactcatttatcaaacacttatcagaaacttacttt 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaagccaaacaacaacccttccaacactcatttatcaaacacttatcagaaacttacttt 244

                                                      
Query: 241 acataatgctgtaagccagctttgaggaccatacaaatcagga 283
           |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 243 acataaggctgtaagccagctttgaggaccatacaaatcagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 681
Length adjustment: 9
Effective length of query: 277
Effective length of database: 672
Effective search space:   186144
Effective search space used:   186144
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)