BAC Information

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BAC

Clone NameMSMg01-170I16
Chromosome19 (Build37)
Map Location 14,370,700 - 14,370,977
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
Downstream geneEG667433, Tle4, EG433225, EG635497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170I16.T7 (MSMg01no170_i16.b1)MSMg01-170I16.TJ (MSMg01no170_i16.g1)
ACCAG367073AG367074
length740744
length of high quality
(start - end)
320 (46 - 365)273 (77 - 349)
definitionCHROMAT_FILE: MSMg01no170_i16.b1 PHD_FILE: MSMg01no170_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:31 2005CHROMAT_FILE: MSMg01no170_i16.g1 PHD_FILE: MSMg01no170_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGATGTGTTCTTGAATTCGGTTGGCTAGAAAATATCATCCTGACT
GAGGTAACTCAATCACAAAAGAACAGACATGGTTTGTAGTCACTGATAAG
TGGATATTAGCCCAAAAGTGCCAAACAATTCACAGACCACATGAAGCTCA
AGACGAAGGAAGACCACAGTGTGGGTGCTTCAGTCCTTCTTAGAAGAACA
AAATACTCACAGGAGCAAATATGAAGATAAAGTGTAGAGCAGAGACTGAA
GGATAGGCCATCCAGAGACTGTCCCTCTTGGAGATTCATTCCATATACAG
TTACCAAACCCAGATTTTATTGTGCACCGCCCCCCCCGAATACTGAAAGG
AGCCTGATAGATATGGCTGTCTCATGAGAGGCCCTGCTAGATAGAGCCTT
GCAAATACAGAGGCAGATAGTCACAGCCAACCATTGGACTGAGTACAGAG
TCCCTAATAGAGGAGTTAGAGAAGGTACTGAAGGAATTGAAGGGGCTTGC
AACCCCCTACGAAGAACATTAATATCAACCAACAGGAACCCCCTGGGTTC
CCAGGGACTATTTCATCATCAAAGGAGTACATATGTCTCCAGCTGCATAT
GTAGCACATTATGGTCTTGCCATGTTTCACCGCTATATAAGCCCCCTGGC
CTTGTGGACGTTTGACACCCGCCTTGTCTATTCTTTCCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCCATCCCAGCTCTCTGTGGT
TCTATGGCTGAAACTGACTCTGTATAGGTCAGTTTTCTTTCCCCTAAAAT
GTGCTTTCTTTGTCAAATGACGATGAAGTCTTTAATCTTTTCTACAAAGT
AAAGTTCTTTTTCTGTCTGTCCAACTCACTTGTAAGACCCAGGTTTCTGG
ATAAGACCATATTTGGGAAATTTGATTAGGGTCCCCCTTCACATCTGAAG
TTTATATAATCTAGTGACTTCCTTTGAGAAAAGTAGTATCAGGCAGGTGA
GATGTTGGTGATTATCTGCCTGCCCCCGCTGAGGTAAGATGGGTAAGAGA
GATGTTGAGATGGCCAAAACAAATGAAAATATGTCTGAGAGAGCTGGCCG
CCAATGTTGAGGACCTAACTTTTGTTCTTACACCCCTGATACGAGGAGAG
AACTTATTCCTACAACCTTGTTATTCGCATTCTACATTTTTGCGCTAGCA
TGCCCCTCTCATATTTTACTTTTGTCCACCCGTTTCCAAATATTAGCATT
CCCTGTCAACTTCCTTTATTTTTCTTTTTTATTCACCAACCATCTTTCCT
TCCTGTTTTTTTAACATCCTTTCTTACACCAATTTTCCCCTCGCCATTCT
TACCCTTCGCCTGCTTCCCTTTATAATGCCCCATTATTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_i16.g1 MSMg01no170_i16.g1 CHROMAT_FILE:
MSMg01no170_i16.g1 PHD_FILE: MSMg01no170_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:31 2005
         (273 letters)



>mm_chr19_14370500_14371177
          Length = 678

 Score =  499 bits (258), Expect = e-146
 Identities = 271/278 (97%), Gaps = 5/278 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccgccatcccagctctctgtggttctatggctgaaactgactctgtataggtcagtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tccgccatcccagctctctgtggttctatggctgaaactgactctgtataggtcagtttt 419

                                                                       
Query: 61  ctttcccctaaaatgtgctttctttgtcaaatgacgatgaagtctt-----taatctttt 115
           |||||||||||||||||||||||||||||||||| |||||||||||     |||||||||
Sbjct: 418 ctttcccctaaaatgtgctttctttgtcaaatgatgatgaagtctttaaaataatctttt 359

                                                                       
Query: 116 ctacaaagtaaagttctttttctgtctgtccaactcacttgtaagacccaggtttctgga 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctacaaagtaaagttctttttctgtctgtccaactcacttgtaagacccaggtttctgga 299

                                                                       
Query: 176 taagaccatatttgggaaatttgattagggtcccccttcacatctgaagtttatataatc 235
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 298 taagaccatatttgggaaatttgattagggtcccctttcacatctgaagtttatataatc 239

                                                 
Query: 236 tagtgacttcctttgagaaaagtagtatcaggcaggtg 273
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagtgacttcctttgagaaaagtagtatcaggcaggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 678
Length adjustment: 9
Effective length of query: 264
Effective length of database: 669
Effective search space:   176616
Effective search space used:   176616
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)