BAC Information

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BAC

Clone NameMSMg01-173O11
Chromosome19 (Build37)
Map Location 9,014,068 - 9,014,312
singlet/doubletsinglet
Overlap geneEml3
Upstream geneAB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1
Downstream geneMta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173O11.T7 (MSMg01no173_o11.b1)MSMg01-173O11.TJ (MSMg01no173_o11.g1)
ACCAG369370AG369371
length716723
length of high quality
(start - end)
304 (372 - 675)246 (69 - 314)
definitionCHROMAT_FILE: MSMg01no173_o11.b1 PHD_FILE: MSMg01no173_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:39 2005CHROMAT_FILE: MSMg01no173_o11.g1 PHD_FILE: MSMg01no173_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTCC
TCCTGAGCAAAGACAGAAAGCTGCTGTGTGCTGCAAAGCCCTAGGCCAGA
GCCCCACTTTCCCAATCCCCAACCAGAGATCACGCCAAGGCCAAGCATGC
CACCAGCCTCCGGAGCGCACTTGCGAAATAAACTTGCCCAAACTTGGACT
TCTCGCTTGAAAACTTAGATTTACTTGTTAATTCTGAAGGGAAAACATGG
CAAGATTACAAGGAAGAAGTCTGGCAAGCTCCTACTTAATTGGCACTAGT
ACACTCACATGCCTTCAGAAGGATGAGCTAAAAGGCACCTAACATTTATT
TTTATGACCCCCCCTACCCCCAAAGGTGCCACCTGATGTGATCATAAGGA
ACAGCATCAGACACATCACACAAAGGGATATTGCTACAAAACAACTGGCT
CCATACCCTTCAAAAGGATCAATGCCAGGCCAGCAAGAGGGGAGCAAGTA
AAAGTACTTGCTGCCAAGCCTAAGGACATGATTTCGATCCTCAAGACCAA
AGATCCCAGGTTCCAAGGTTTGTCCTCTGACTTCCACACTTGAGCCATGT
CTCCCACACTCGGACACACAATCACTCACTCATACGCATACACTCATACA
CACATTAAATTTTTTTAAAAGGAAAAGATATTGCAGCTGCTGGGGTCGTT
GTATACACTTGTAGTC
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCGCGAAAATCTCTATGTGGCCCATGCTGTTTTTGCATTT
GTCATCCTCCTATTTATGCCTCCTAAGAGATTATGTGGGTGCCGACAGGA
GGTTTCTAGTCAGGAGGGCTGATGGTAGTAGAGGAACATCAAGCAGAGGG
GCTGATGTGGAGGGAAATGGAGGTTGGAATTGGACATAGGGATAACCCAG
TAAGTAGGTAAGCTACAGTTTCACACTCTATCTTCTCCAACAAGAACTCA
AGGGAGTTGAAAAATGTTTTTATGCATTGTGGTGCATGCCATTAATCCCA
GCACTGTTTTTTTTTTGACCACCCCCCGCCTGGATCTTTATGAGTTCAAG
GCCAGCCTGGTCTACATAGTGAGTTCTAGGGCAGCCAAGGCTGCATAGGA
AGACTGTGCCTCAAAATACAAAACAAAGGAAAGGCCAGGCGTGGTGGCGC
ATGCCTTTAATCCCAGCACTGGGGAGGCAGAGGCAGGTGGATTTCTGAGT
TCGAGGCCAGCCTGGTCTACTAAGTGAGTTCCAGGACAGCCTGGGCTATA
CCGATAATCCCTGCCTCGAATAAACCAAAACCTAACCATTTCTACTGCCC
CCCCCTATTTTTTTTTATAGCCCTTCTTTGGTATCAAGCCGGCTTGCTCC
CACGAAGACATGCGCTTTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_o11.g1 MSMg01no173_o11.g1 CHROMAT_FILE:
MSMg01no173_o11.g1 PHD_FILE: MSMg01no173_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:39 2005
         (246 letters)



>mm_chr19_9013867_9014512
          Length = 646

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctctatgtggcccatgctgtttttgcatttgtcatcctcctatttatgcctcctaagag 61
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 202 tctctatgtggcccatgctgtttttgcatttgtcatcctcctaattatgtctcctaagag 261

                                                                       
Query: 62  attatgtgggtgccgacaggaggtttctagtcaggagggctgatggtagtagaggaacat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 attatgtgggtgccgacaggaggtttctagtcaggagggctgatggtagtagaggaacat 321

                                                                       
Query: 122 caagcagaggggctgatgtggagggaaatggaggttggaattggacatagggataaccca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 322 caagcagaggggctgatgtggagggaaatggaggttggaattggacatagggataacccg 381

                                                                       
Query: 182 gtaagtaggtaagctacagtttcacactctatcttctccaacaagaactcaagggagttg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtaagtaggtaagctacagtttcacactctatcttctccaacaagaactcaagggagttg 441

                
Query: 242 aaaaa 246
           |||||
Sbjct: 442 aaaaa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)